Variant report
| Variant | rs73234097 |
|---|---|
| Chromosome Location | chr5:117579186-117579187 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:117573331..117574961-chr5:117577405..117579413,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11742447 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11744859 | 0.89[ASN][1000 genomes] |
| rs11745949 | 1.00[ASN][1000 genomes] |
| rs11747811 | 1.00[ASN][1000 genomes] |
| rs11747832 | 1.00[ASN][1000 genomes] |
| rs11749442 | 1.00[ASN][1000 genomes] |
| rs11749504 | 1.00[ASN][1000 genomes] |
| rs13162729 | 0.87[ASN][1000 genomes] |
| rs1382728 | 1.00[ASN][1000 genomes] |
| rs1479227 | 1.00[ASN][1000 genomes] |
| rs17143910 | 1.00[ASN][1000 genomes] |
| rs17143913 | 1.00[ASN][1000 genomes] |
| rs17143914 | 1.00[ASN][1000 genomes] |
| rs17143919 | 1.00[ASN][1000 genomes] |
| rs73237722 | 1.00[ASN][1000 genomes] |
| rs73237729 | 1.00[ASN][1000 genomes] |
| rs73237731 | 1.00[ASN][1000 genomes] |
| rs73237738 | 1.00[ASN][1000 genomes] |
| rs73237749 | 1.00[ASN][1000 genomes] |
| rs73237752 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1027428 | chr5:117072745-118036353 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv537877 | chr5:117072745-118036353 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv1067621 | chr5:117102544-118036352 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 4 | nsv531292 | chr5:117102544-118036352 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 5 | esv2422395 | chr5:117442806-117887910 | Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 6 | nsv882762 | chr5:117499480-117706786 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:117578600-117579400 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
