Variant report

Variant	rs73234377
Chromosome Location	chr14:35039026-35039027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr14:35039007-35039201	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:34931264..34933781-chr14:35036806..35039605,2	K562	blood:

Variant related genes	Relation type
RPS19P3	TF binding region
ENSG00000129521	Chromatin interaction
ENSG00000165389	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10134877	1.00[AMR][1000 genomes]
rs7142220	1.00[AMR][1000 genomes]
rs7142802	1.00[AMR][1000 genomes]
rs7155931	1.00[AMR][1000 genomes]
rs73234328	1.00[AMR][1000 genomes]
rs73236268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73244405	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1049048	chr14:34969406-35048672	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv977453	chr14:35038000-35045031	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35024000-35040600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:35024200-35041800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:35024200-35046200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr14:35024400-35040600	Weak transcription	K562	blood
5	chr14:35024400-35053600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:35024400-35056800	Weak transcription	Small Intestine	intestine
7	chr14:35024400-35060600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:35024400-35066200	Weak transcription	Stomach Mucosa	stomach
9	chr14:35031400-35042800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:35031400-35047400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:35031400-35052600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr14:35031400-35073400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr14:35031400-35073400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr14:35031400-35078000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr14:35031600-35039200	Strong transcription	Brain Hippocampus Middle	brain
16	chr14:35031600-35043600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:35031600-35044000	Strong transcription	Stomach Smooth Muscle	stomach
18	chr14:35031600-35045000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr14:35031600-35045200	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr14:35031600-35045200	Strong transcription	Placenta	Placenta
21	chr14:35031600-35047200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:35031600-35049800	Strong transcription	Osteobl	bone
23	chr14:35031600-35050600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:35031600-35055800	Strong transcription	Liver	Liver
25	chr14:35031600-35059600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:35031600-35074000	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr14:35031600-35074000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:35031600-35079400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr14:35031800-35039400	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr14:35031800-35043000	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr14:35031800-35044800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr14:35031800-35044800	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr14:35031800-35045000	Strong transcription	Dnd41	blood
34	chr14:35031800-35063400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr14:35032000-35039800	Strong transcription	Spleen	Spleen
36	chr14:35032000-35043400	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr14:35032000-35043800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:35032000-35043800	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr14:35032000-35043800	Strong transcription	Fetal Intestine Large	intestine
40	chr14:35032000-35043800	Strong transcription	Fetal Muscle Leg	muscle
41	chr14:35032000-35043800	Strong transcription	Thymus	Thymus
42	chr14:35032000-35044400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr14:35032000-35045000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:35032000-35056000	Strong transcription	Fetal Thymus	thymus
45	chr14:35032000-35072600	Strong transcription	Fetal Intestine Small	intestine
46	chr14:35032000-35072600	Strong transcription	Fetal Stomach	stomach
47	chr14:35032000-35078200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr14:35032000-35078600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr14:35032200-35039200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr14:35032200-35039200	Strong transcription	Brain Germinal Matrix	brain

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