Variant report

Variant	rs73234451
Chromosome Location	chr4:20329344-20329345
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56008233	0.81[EUR][1000 genomes]
rs73234467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73252414	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593793	chr4:20282334-20333722	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878740	chr4:20292239-20333722	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20320200-20334000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:20323200-20334800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:20323400-20334800	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:20323600-20334000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:20323800-20335000	Weak transcription	Brain Substantia Nigra	brain
6	chr4:20326000-20338800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:20327400-20329600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:20328200-20329600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:20328200-20334800	Weak transcription	Brain Anterior Caudate	brain
10	chr4:20328800-20329800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:20329000-20329600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:20329000-20331600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:20329000-20334800	Weak transcription	Fetal Kidney	kidney
14	chr4:20329000-20334800	Weak transcription	Fetal Lung	lung
15	chr4:20329000-20335600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:20329000-20350200	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:20329200-20348800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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