Variant report

Variant	rs73235973
Chromosome Location	chr13:80168851-80168852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61291112	0.83[AMR][1000 genomes]
rs61342959	0.83[AMR][1000 genomes]
rs73234681	0.85[AMR][1000 genomes]
rs73235985	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80164600-80169800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:80166600-80169000	Enhancers	HMEC	breast
3	chr13:80167000-80169000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr13:80167200-80169000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr13:80168400-80171600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr13:80168600-80177600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:80168600-80177600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:80168800-80169200	Weak transcription	NHEK	skin
9	chr13:80168800-80169800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links