Variant report

Variant	rs73236170
Chromosome Location	chr4:56505111-56505112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56211245..56214093-chr4:56502603..56505420,3	K562	blood:
2	chr4:56408119..56414507-chr4:56501105..56505595,8	K562	blood:
3	chr4:56504870..56506522-chr4:56515627..56517625,2	K562	blood:

Variant related genes	Relation type
ENSG00000134852	Chromatin interaction
ENSG00000128039	Chromatin interaction
ENSG00000272969	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10000512	0.86[AMR][1000 genomes]
rs10011089	0.86[AMR][1000 genomes]
rs10011801	0.86[AMR][1000 genomes]
rs10017749	0.86[AMR][1000 genomes]
rs10018932	0.84[AMR][1000 genomes]
rs10026315	0.86[AMR][1000 genomes]
rs13434995	0.86[AMR][1000 genomes]
rs17725110	0.86[AMR][1000 genomes]
rs17725163	0.86[AMR][1000 genomes]
rs17781708	0.86[AMR][1000 genomes]
rs1873090	0.84[AMR][1000 genomes]
rs1873091	0.86[AMR][1000 genomes]
rs2412666	0.86[AMR][1000 genomes]
rs28416150	0.86[AMR][1000 genomes]
rs28473211	0.86[AMR][1000 genomes]
rs28713371	0.81[AMR][1000 genomes]
rs28756087	0.86[AMR][1000 genomes]
rs3805385	0.81[AMR][1000 genomes]
rs3805387	0.81[AMR][1000 genomes]
rs3805388	0.86[AMR][1000 genomes]
rs55849318	0.86[AMR][1000 genomes]
rs55893990	0.82[ASN][1000 genomes]
rs56288855	0.86[AMR][1000 genomes]
rs57178140	0.84[AMR][1000 genomes]
rs59571323	0.84[AMR][1000 genomes]
rs62308667	0.86[AMR][1000 genomes]
rs62308708	0.86[AMR][1000 genomes]
rs73236165	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv998179	chr4:56425126-56694339	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv932636	chr4:56438618-56667329	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879021	chr4:56482750-56648713	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3395811	chr4:56486113-56514675	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3449447	chr4:56504844-56505149	Enhancers Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56504600-56505600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:56504600-56507000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:56505000-56505400	Weak transcription	K562	blood

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