Variant report

Variant	rs73236758
Chromosome Location	chr12:9945431-9945432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:9899277..9916007-chr12:9939474..9959569,108	K562	blood:
2	chr12:9855011..9857485-chr12:9943793..9945990,2	K562	blood:
3	chr12:9935876..9938398-chr12:9943768..9945628,3	K562	blood:
4	chr12:9916372..9918378-chr12:9944960..9947867,2	K562	blood:
5	chr12:9936898..9938906-chr12:9943638..9945628,2	K562	blood:
6	chr12:9939384..9941433-chr12:9943747..9946040,4	K562	blood:
7	chr12:9901100..9927208-chr12:9932356..9954328,123	K562	blood:

Variant related genes	Relation type
ENSG00000256582	Chromatin interaction
ENSG00000110848	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58882780	0.84[ASN][1000 genomes]
rs73236736	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73236744	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3377937	chr12:9938734-9962518	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9930200-9945800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr12:9941000-9946200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:9941000-9950200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:9944600-9947800	Enhancers	Hela-S3	cervix
5	chr12:9945000-9946200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:9945000-9946400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr12:9945000-9948000	Enhancers	HUVEC	blood vessel
8	chr12:9945200-9945600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr12:9945200-9945800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr12:9945200-9945800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr12:9945200-9946000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:9945200-9946200	Enhancers	Primary B cells from cord blood	blood
13	chr12:9945200-9946400	Enhancers	Primary T cells from cord blood	blood
14	chr12:9945200-9946400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr12:9945200-9946400	Enhancers	K562	blood
16	chr12:9945200-9946600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr12:9945200-9946800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr12:9945200-9947400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr12:9945200-9948600	Enhancers	Primary B cells from peripheral blood	blood
20	chr12:9945400-9945600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr12:9945400-9945600	Flanking Active TSS	NH-A	brain
22	chr12:9945400-9945800	Enhancers	NHDF-Ad	bronchial
23	chr12:9945400-9946000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr12:9945400-9946400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr12:9945400-9946400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr12:9945400-9946400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr12:9945400-9947000	Enhancers	Primary hematopoietic stem cells	blood
28	chr12:9945400-9947000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr12:9945400-9947000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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