Variant report

Variant	rs73237771
Chromosome Location	chr8:65537433-65537434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16931365	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16931369	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58573805	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv1847262	chr8:65509694-65595527	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv611449	chr8:65511032-65543401	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65499800-65553000	Weak transcription	Pancreas	Pancrea
2	chr8:65503600-65538400	Weak transcription	Fetal Kidney	kidney
3	chr8:65517200-65540000	Weak transcription	Fetal Stomach	stomach
4	chr8:65517200-65540200	Weak transcription	Fetal Lung	lung
5	chr8:65517400-65540800	Weak transcription	Fetal Muscle Leg	muscle
6	chr8:65523200-65542400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:65527800-65542400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:65528000-65537600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:65530000-65539800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:65535200-65542200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:65536000-65537800	Weak transcription	Brain Anterior Caudate	brain
12	chr8:65536200-65540200	Weak transcription	Ovary	ovary
13	chr8:65536200-65547600	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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