Variant report

Variant	rs73239909
Chromosome Location	chr14:46956664-46956665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12888967	1.00[AMR][1000 genomes]
rs1381636	1.00[AMR][1000 genomes]
rs1462384	1.00[AMR][1000 genomes]
rs1564065	1.00[AMR][1000 genomes]
rs1870885	1.00[AMR][1000 genomes]
rs189658	1.00[AMR][1000 genomes]
rs2600803	1.00[AMR][1000 genomes]
rs2600806	1.00[AMR][1000 genomes]
rs2600807	1.00[AMR][1000 genomes]
rs2600822	1.00[AMR][1000 genomes]
rs2600823	1.00[AMR][1000 genomes]
rs2642071	1.00[AMR][1000 genomes]
rs2642073	1.00[AMR][1000 genomes]
rs2642082	1.00[AMR][1000 genomes]
rs2642087	1.00[AMR][1000 genomes]
rs2817525	1.00[AMR][1000 genomes]
rs2817531	1.00[AMR][1000 genomes]
rs2817534	1.00[AMR][1000 genomes]
rs2817535	1.00[AMR][1000 genomes]
rs2924075	1.00[AMR][1000 genomes]
rs2924092	1.00[AMR][1000 genomes]
rs2924093	1.00[AMR][1000 genomes]
rs2924094	1.00[AMR][1000 genomes]
rs2934581	1.00[AMR][1000 genomes]
rs2934582	1.00[AMR][1000 genomes]
rs2934584	1.00[AMR][1000 genomes]
rs2934590	1.00[AMR][1000 genomes]
rs2934594	1.00[AMR][1000 genomes]
rs3007043	1.00[AMR][1000 genomes]
rs3007052	1.00[AMR][1000 genomes]
rs3007054	1.00[AMR][1000 genomes]
rs3007056	1.00[AMR][1000 genomes]
rs360171	1.00[AMR][1000 genomes]
rs360173	1.00[AMR][1000 genomes]
rs360174	1.00[AMR][1000 genomes]
rs360176	1.00[AMR][1000 genomes]
rs360187	1.00[AMR][1000 genomes]
rs420472	1.00[AMR][1000 genomes]
rs421932	1.00[AMR][1000 genomes]
rs4313729	1.00[AMR][1000 genomes]
rs4372604	1.00[AMR][1000 genomes]
rs443130	1.00[AMR][1000 genomes]
rs4900708	1.00[AMR][1000 genomes]
rs57608962	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6572387	1.00[AMR][1000 genomes]
rs73239912	0.93[AFR][1000 genomes]
rs73239914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73244199	1.00[AMR][1000 genomes]
rs73245807	1.00[AMR][1000 genomes]
rs73245843	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761411	chr14:46716963-46996307	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2751278	chr14:46718250-47225891	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1044526	chr14:46727837-46975636	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv542084	chr14:46727837-46975636	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv456292	chr14:46777209-46958836	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv564742	chr14:46777209-46958836	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv901862	chr14:46797353-47083005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv901863	chr14:46797353-47247399	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2829996	chr14:46799990-47344432	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv901870	chr14:46825242-47125523	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv901871	chr14:46869797-46961322	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv564753	chr14:46869797-47006889	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1037823	chr14:46873171-47013125	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1040847	chr14:46905206-47869359	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv542085	chr14:46905206-47869359	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv542086	chr14:46905406-47662394	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv1049865	chr14:46905406-47869220	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv542087	chr14:46905406-47869220	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv1040105	chr14:46921938-46998158	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv901872	chr14:46933384-47006889	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv1051025	chr14:46935174-46996307	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:46955600-46958200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr14:46955800-46958600	Enhancers	Liver	Liver
3	chr14:46956400-46957400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:46956600-46957000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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