Variant report

Variant	rs73240126
Chromosome Location	chr4:19947130-19947131
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16868880	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28796912	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28815615	1.00[ASN][1000 genomes]
rs28827916	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28833836	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4543109	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56391331	1.00[ASN][1000 genomes]
rs59032619	0.87[ASN][1000 genomes]
rs61788996	1.00[ASN][1000 genomes]
rs73236299	1.00[ASN][1000 genomes]
rs73236300	1.00[ASN][1000 genomes]
rs73238238	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73240131	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7435851	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752044	chr4:19788263-20126804	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1003707	chr4:19898883-19963213	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
5	nsv1005430	chr4:19932874-20013705	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19944800-19948800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:19945600-19947200	Enhancers	Osteobl	bone
3	chr4:19945800-19947400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:19945800-19947400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:19945800-19947600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:19946000-19947200	Enhancers	NHDF-Ad	bronchial
7	chr4:19946000-19947400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:19946000-19947800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:19946000-19947800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:19946000-19948400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:19946000-19948800	Enhancers	HMEC	breast
12	chr4:19946200-19947200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:19946200-19947800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr4:19946400-19947400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:19946400-19947800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr4:19946400-19947800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr4:19946400-19948000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:19946400-19949800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:19946600-19947200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:19946600-19947400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr4:19946600-19947600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr4:19946600-19947800	Enhancers	Spleen	Spleen
23	chr4:19946600-19949000	Enhancers	HUVEC	blood vessel
24	chr4:19946600-19949800	Enhancers	NHLF	lung
25	chr4:19946800-19947600	Weak transcription	Fetal Lung	lung
26	chr4:19946800-19949600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:19946800-19949600	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links