Variant report
| Variant | rs73240772 |
|---|---|
| Chromosome Location | chr5:118377072-118377073 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr5:118376917-118377094 | HepG2 | liver: | n/a | chr5:118377027-118377038 |
| 2 | CEBPB | chr5:118376951-118377106 | HepG2 | liver: | n/a | chr5:118377027-118377038 |
| 3 | CEBPB | chr5:118376972-118377114 | K562 | blood: | n/a | chr5:118377027-118377038 |
| 4 | CEBPB | chr5:118376886-118377165 | HepG2 | liver: | n/a | chr5:118377027-118377038 |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000249494 | TF binding region |
| ENSG00000172869 | Chromatin interaction |
| ENSG00000249494 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs11950037 | 1.00[AMR][1000 genomes] |
| rs11953628 | 1.00[AMR][1000 genomes] |
| rs28667211 | 1.00[AMR][1000 genomes] |
| rs6595171 | 1.00[AMR][1000 genomes] |
| rs73240737 | 1.00[AMR][1000 genomes] |
| rs73240763 | 0.85[AMR][1000 genomes] |
| rs73240765 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73240782 | 1.00[AMR][1000 genomes] |
| rs7341052 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882767 | chr5:117931730-118385691 | Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv1015878 | chr5:118288904-118414706 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv537881 | chr5:118288904-118414706 | Active TSS Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv882774 | chr5:118325429-118553470 | Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 5 | nsv1018539 | chr5:118355284-118445244 | Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:118374000-118378400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
