Variant report

Variant	rs7324094
Chromosome Location	chr13:49309913-49309914
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12583426	1.00[JPT][hapmap]
rs12584796	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12584956	1.00[ASN][1000 genomes]
rs12585005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs60757301	1.00[ASN][1000 genomes]
rs74074745	1.00[ASN][1000 genomes]
rs74074747	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv832605	chr13:49171305-49344970	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv2758327	chr13:49283983-49472517	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2759936	chr13:49283983-49472517	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3492096	chr13:49309870-49310232	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3387282	chr13:49309874-49310250	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3492094	chr13:49309893-49310110	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3492095	chr13:49309907-49310178	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3347197	chr13:49309913-49310080	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49303000-49312200	Weak transcription	Fetal Lung	lung
2	chr13:49306400-49311800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:49306600-49312200	Weak transcription	Left Ventricle	heart
4	chr13:49306800-49312000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:49307600-49311800	Weak transcription	Dnd41	blood
6	chr13:49308400-49312200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr13:49308600-49312600	Weak transcription	Right Ventricle	heart
8	chr13:49309200-49310200	Weak transcription	Fetal Brain Female	brain
9	chr13:49309200-49310400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr13:49309400-49310000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr13:49309400-49310200	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links