Variant report

Variant	rs73242457
Chromosome Location	chr20:15663343-15663344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34974579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59087163	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6043435	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6043457	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6043466	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv3303	chr20:15656109-15700969	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15661200-15664800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:15662200-15664000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr20:15662800-15664000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr20:15662800-15664000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:15662800-15664000	Enhancers	Osteobl	bone
6	chr20:15663000-15663800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr20:15663000-15664000	Enhancers	HUVEC	blood vessel
8	chr20:15663000-15664000	Enhancers	NHDF-Ad	bronchial
9	chr20:15663200-15663600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr20:15663200-15664000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr20:15663200-15664000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr20:15663200-15664000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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