Variant report
Variant | rs73245457 |
---|---|
Chromosome Location | chr14:34889861-34889862 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:11)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:11 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | KAP1 | chr14:34889504-34890290 | K562 | blood: | n/a | n/a |
2 | SETDB1 | chr14:34889601-34890244 | U2OS | brain: | n/a | n/a |
3 | ZNF143 | chr14:34889816-34890109 | Hela-S3 | cervix: | n/a | n/a |
4 | CBX3 | chr14:34889782-34890149 | K562 | blood: | n/a | n/a |
5 | MAX | chr14:34889779-34890367 | NB4 | blood: | n/a | n/a |
6 | CBX3 | chr14:34889789-34890064 | K562 | blood: | n/a | n/a |
7 | SPI1 | chr14:34889860-34890204 | HL-60 | blood: | n/a | n/a |
8 | ZNF143 | chr14:34889832-34890101 | K562 | blood: | n/a | n/a |
9 | MYC | chr14:34889794-34890322 | NB4 | blood: | n/a | n/a |
10 | TRIM28 | chr14:34889740-34890142 | K562 | blood: | n/a | n/a |
11 | SETDB1 | chr14:34889757-34890222 | K562 | blood: | n/a | n/a |
No data |
(count:2 , 50 per page) page:
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No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000223593 | TF binding region |
ENSG00000165389 | Chromatin interaction |
ENSG00000129521 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10129915 | 1.00[EUR][1000 genomes] |
rs10130046 | 1.00[EUR][1000 genomes] |
rs10133741 | 1.00[EUR][1000 genomes] |
rs10143109 | 1.00[EUR][1000 genomes] |
rs17102490 | 1.00[EUR][1000 genomes] |
rs28493719 | 1.00[EUR][1000 genomes] |
rs28680406 | 1.00[EUR][1000 genomes] |
rs59038005 | 1.00[EUR][1000 genomes] |
rs59347396 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7142802 | 1.00[EUR][1000 genomes] |
rs73234328 | 1.00[EUR][1000 genomes] |
rs73242797 | 1.00[EUR][1000 genomes] |
rs73242799 | 1.00[EUR][1000 genomes] |
rs73242802 | 1.00[EUR][1000 genomes] |
rs73244424 | 1.00[EUR][1000 genomes] |
rs73244427 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73245453 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73245459 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73245465 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73245466 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73245475 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73245485 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1040980 | chr14:34345018-35255592 | Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 109 gene(s) | inside rSNPs | diseases |
2 | nsv1051104 | chr14:34592378-35007083 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
3 | nsv949738 | chr14:34616331-34990688 | Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
4 | nsv564192 | chr14:34725233-34996507 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
5 | nsv564193 | chr14:34728127-35000188 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
6 | nsv528989 | chr14:34744426-34998705 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
7 | nsv1054949 | chr14:34834260-34992049 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
8 | nsv542025 | chr14:34834260-34992049 | Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
9 | nsv1050218 | chr14:34851521-34969433 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
10 | nsv1048369 | chr14:34886956-34974774 | Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:34889400-34890600 | ZNF genes & repeats | Monocytes-CD14+_RO01746 | blood |
2 | chr14:34889600-34890800 | ZNF genes & repeats | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |