Variant report

Variant	rs73245752
Chromosome Location	chr4:26289512-26289513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73245745	1.00[ASN][1000 genomes]
rs73245753	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv519405	chr4:26284472-26292555	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv593852	chr4:26284472-26292636	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1793856	chr4:26284472-26294886	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1794278	chr4:26284472-26294886	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1798961	chr4:26284472-26294886	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv593853	chr4:26286920-26295174	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26275600-26289600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:26282000-26290800	Weak transcription	Placenta	Placenta
3	chr4:26284000-26290000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:26284200-26289600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:26284200-26290000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:26284200-26290000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:26284400-26289600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:26284400-26290000	Weak transcription	NHLF	lung
9	chr4:26284600-26289800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:26286400-26290000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:26288200-26289800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr4:26289000-26289800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:26289200-26289600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:26289400-26289600	Enhancers	GM12878-XiMat	blood
15	chr4:26289400-26289800	Weak transcription	Primary B cells from cord blood	blood
16	chr4:26289400-26290000	Enhancers	NHDF-Ad	bronchial
17	chr4:26289400-26290200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr4:26289400-26290400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr4:26289400-26291200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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