Variant report

Variant	rs73245933
Chromosome Location	chr6:165325678-165325679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11759480	0.82[ASN][1000 genomes]
rs60797079	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv521153	chr6:165279393-165343557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv605244	chr6:165293940-165330551	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165321000-165325800	Weak transcription	Fetal Brain Female	brain
2	chr6:165321400-165326000	Weak transcription	Fetal Brain Male	brain
3	chr6:165323800-165326400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:165324400-165326000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:165324600-165325800	Active TSS	Brain Cingulate Gyrus	brain
6	chr6:165324600-165325800	Active TSS	Brain Hippocampus Middle	brain
7	chr6:165324600-165325800	Active TSS	Brain Substantia Nigra	brain
8	chr6:165324800-165325800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:165324800-165325800	Active TSS	Brain Angular Gyrus	brain
10	chr6:165324800-165325800	Active TSS	Brain Anterior Caudate	brain
11	chr6:165324800-165325800	Active TSS	Right Atrium	heart
12	chr6:165324800-165326000	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr6:165324800-165326000	Active TSS	Stomach Smooth Muscle	stomach
14	chr6:165324800-165326200	Enhancers	Adipose Nuclei	Adipose
15	chr6:165325000-165325800	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr6:165325200-165326000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr6:165325200-165326400	Enhancers	Fetal Stomach	stomach
18	chr6:165325400-165325800	Flanking Active TSS	Brain Germinal Matrix	brain
19	chr6:165325400-165325800	Active TSS	Fetal Muscle Trunk	muscle
20	chr6:165325400-165325800	Enhancers	Left Ventricle	heart
21	chr6:165325400-165325800	Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr6:165325400-165326000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:165325400-165326200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:165325400-165326200	Enhancers	Fetal Heart	heart
25	chr6:165325400-165326200	Enhancers	HSMM	muscle
26	chr6:165325400-165326400	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr6:165325400-165326400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:165325400-165326800	Enhancers	Fetal Muscle Leg	muscle
29	chr6:165325600-165325800	Active TSS	Psoas Muscle	Psoas
30	chr6:165325600-165325800	Flanking Active TSS	HSMMtube	muscle
31	chr6:165325600-165326000	Enhancers	Fetal Lung	lung
32	chr6:165325600-165326200	Enhancers	Colon Smooth Muscle	Colon
33	chr6:165325600-165327200	Enhancers	Right Ventricle	heart

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