Variant report

Variant	rs7324615
Chromosome Location	chr13:50035429-50035430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50027049..50030534-chr13:50032779..50035441,4	K562	blood:
2	chr13:50020464..50022245-chr13:50034255..50036825,2	K562	blood:
3	chr13:50029751..50032528-chr13:50034704..50037567,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000215462	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12429621	1.00[JPT][hapmap]
rs17072932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17072933	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17073175	1.00[JPT][hapmap]
rs2296502	1.00[JPT][hapmap]
rs60723161	0.87[ASN][1000 genomes]
rs67216195	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7318481	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73188685	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73188686	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7324805	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335220	1.00[JPT][hapmap]
rs7358961	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7990424	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7994710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7995006	1.00[JPT][hapmap]
rs7998078	0.87[ASN][1000 genomes]
rs7998996	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9316456	1.00[JPT][hapmap]
rs9568203	0.82[YRI][hapmap]
rs9591262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9591264	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9591288	1.00[JPT][hapmap]
rs9596107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9596108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9596110	1.00[CHB][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596111	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9596112	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9596116	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9596127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9596137	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047311	chr13:49895019-50224227	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv430558	chr13:49914393-50059354	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv430559	chr13:49930369-50059354	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv430560	chr13:49930643-50059354	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv430562	chr13:49930643-50067246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv430561	chr13:49930643-50089844	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv430564	chr13:49945247-50059354	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv430566	chr13:49945247-50089844	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv430571	chr13:49961137-50059354	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv430570	chr13:49961137-50089844	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	esv1807924	chr13:49991885-50036730	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	nsv523648	chr13:50005444-50086266	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	nsv561613	chr13:50013622-50086266	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
14	nsv900070	chr13:50013622-50087142	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50019400-50036200	Weak transcription	Esophagus	oesophagus
2	chr13:50019600-50035800	Weak transcription	Left Ventricle	heart
3	chr13:50019600-50035800	Weak transcription	HSMM	muscle
4	chr13:50019600-50036000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr13:50019800-50035800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr13:50019800-50035800	Weak transcription	Fetal Muscle Leg	muscle
7	chr13:50019800-50037400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr13:50019800-50037400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr13:50020000-50035600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr13:50020000-50035600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr13:50020000-50037200	Weak transcription	Right Ventricle	heart
12	chr13:50020200-50035800	Weak transcription	Pancreas	Pancrea
13	chr13:50020200-50068400	Weak transcription	HMEC	breast
14	chr13:50020600-50035800	Weak transcription	Thymus	Thymus
15	chr13:50021000-50035800	Weak transcription	Fetal Intestine Small	intestine
16	chr13:50021800-50035800	Weak transcription	Brain Anterior Caudate	brain
17	chr13:50022000-50035600	Weak transcription	Brain Hippocampus Middle	brain
18	chr13:50022000-50035800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr13:50022000-50069000	Weak transcription	Fetal Brain Male	brain
20	chr13:50023000-50068000	Weak transcription	Hela-S3	cervix
21	chr13:50024600-50035800	Weak transcription	HSMMtube	muscle
22	chr13:50024800-50035600	Weak transcription	Osteobl	bone
23	chr13:50024800-50035800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr13:50024800-50035800	Weak transcription	Small Intestine	intestine
25	chr13:50027000-50036800	Weak transcription	A549	lung
26	chr13:50028600-50035800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr13:50028800-50035800	Weak transcription	Fetal Stomach	stomach
28	chr13:50029000-50035600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr13:50029000-50035800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr13:50029000-50035800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr13:50029000-50035800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr13:50029600-50035600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr13:50029800-50035800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr13:50030600-50035800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr13:50031200-50035800	Weak transcription	Gastric	stomach
36	chr13:50031400-50035800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr13:50031400-50036200	Weak transcription	Brain Angular Gyrus	brain
38	chr13:50031800-50036200	Weak transcription	Lung	lung
39	chr13:50031800-50068800	Weak transcription	Psoas Muscle	Psoas
40	chr13:50032000-50036400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr13:50032200-50035800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr13:50032400-50035800	Strong transcription	Primary hematopoietic stem cells	blood
43	chr13:50032400-50035800	Weak transcription	Ovary	ovary
44	chr13:50032800-50035600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr13:50033600-50035600	Weak transcription	Fetal Brain Female	brain
46	chr13:50033600-50037200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr13:50033800-50035800	Weak transcription	Spleen	Spleen
48	chr13:50034000-50035800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr13:50034000-50036200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr13:50034200-50035800	Strong transcription	Primary monocytes fromperipheralblood	blood

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