Variant report

Variant	rs7324632
Chromosome Location	chr13:39457064-39457065
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39454721..39457366-chr13:39469258..39471504,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12586068	0.83[AFR][1000 genomes]
rs1945500	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1945501	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1945505	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1945507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2156810	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9548522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548526	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9548527	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9548528	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9548529	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9548530	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9603463	0.95[YRI][hapmap];0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39424200-39457800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:39430600-39458000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:39430600-39462400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:39432200-39458200	Weak transcription	Gastric	stomach
5	chr13:39432600-39468600	Weak transcription	Psoas Muscle	Psoas
6	chr13:39436000-39457800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr13:39446400-39458000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:39447000-39457800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr13:39447000-39458800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr13:39447000-39462400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr13:39447000-39462400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr13:39450600-39457800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr13:39451400-39468200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr13:39453400-39457800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr13:39453800-39458200	Weak transcription	Ovary	ovary
16	chr13:39454000-39457800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:39454000-39458000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr13:39454400-39458200	Weak transcription	Fetal Intestine Large	intestine
19	chr13:39454600-39457800	Weak transcription	Fetal Kidney	kidney
20	chr13:39454600-39458000	Weak transcription	Fetal Intestine Small	intestine
21	chr13:39454600-39458200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr13:39455000-39462400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr13:39455400-39458000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr13:39455600-39457200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr13:39456400-39465600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr13:39457000-39457800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr13:39457000-39458400	Enhancers	Muscle Satellite Cultured Cells	--

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