Variant report

Variant	rs73246547
Chromosome Location	chr14:36487894-36487895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10134855	1.00[AMR][1000 genomes]
rs10151821	1.00[AMR][1000 genomes]
rs11156901	1.00[AMR][1000 genomes]
rs1123749	1.00[AMR][1000 genomes]
rs28376637	1.00[AMR][1000 genomes]
rs28714317	1.00[AMR][1000 genomes]
rs28756783	1.00[AMR][1000 genomes]
rs7149973	1.00[AMR][1000 genomes]
rs7157182	1.00[AMR][1000 genomes]
rs73246551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051045	chr14:36116503-36764947	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv542038	chr14:36116503-36764947	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv530036	chr14:36165220-36499370	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1051147	chr14:36413342-36562863	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36482400-36492400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:36484200-36489400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:36484400-36488600	Weak transcription	Brain Angular Gyrus	brain
4	chr14:36484600-36488200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:36484800-36488200	Weak transcription	Brain Substantia Nigra	brain
6	chr14:36487800-36488400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr14:36487800-36489000	Enhancers	Brain Anterior Caudate	brain
8	chr14:36487800-36489200	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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