Variant report

Variant	rs73250923
Chromosome Location	chr4:53882111-53882112
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:53881755..53882893-chr4:55099401..55100106,3	K562	blood:
2	chr4:53875960..53878949-chr4:53880852..53883241,2	MCF-7	breast:
3	chr4:53881814..53882461-chr4:55099539..55100545,3	MCF-7	breast:
4	chr4:53881634..53882407-chr4:55093488..55094444,2	K562	blood:
5	chr4:53881829..53882444-chr4:55100138..55101053,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10013152	0.86[EUR][1000 genomes]
rs13340297	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62338998	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6825075	0.86[EUR][1000 genomes]
rs73250928	0.95[ASN][1000 genomes]
rs73250933	0.95[ASN][1000 genomes]
rs7694940	0.86[EUR][1000 genomes]
rs9312635	0.82[EUR][1000 genomes]
rs9999433	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004889	chr4:53436500-54106281	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv537094	chr4:53436500-54106281	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv508280	chr4:53825060-53907661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:53873400-53886800	Weak transcription	Left Ventricle	heart
2	chr4:53874000-53882200	Enhancers	Fetal Kidney	kidney
3	chr4:53874600-53885000	Weak transcription	Spleen	Spleen
4	chr4:53875800-53882200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr4:53876000-53885800	Weak transcription	Small Intestine	intestine
6	chr4:53876200-53883000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:53876400-53882600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:53876800-53884600	Weak transcription	Liver	Liver
9	chr4:53878400-53882800	Enhancers	NHLF	lung
10	chr4:53878400-53888000	Weak transcription	Right Atrium	heart
11	chr4:53878800-53886200	Weak transcription	Psoas Muscle	Psoas
12	chr4:53879200-53883000	Enhancers	Osteobl	bone
13	chr4:53879200-53885000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:53879200-53885800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:53879400-53882200	Weak transcription	HSMMtube	muscle
16	chr4:53879400-53882400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:53879400-53882400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:53879400-53882600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:53879400-53882600	Enhancers	NHDF-Ad	bronchial
20	chr4:53879400-53882800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:53879400-53885600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:53879400-53887800	Weak transcription	Fetal Heart	heart
23	chr4:53879400-53888400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr4:53879400-53889600	Weak transcription	Aorta	Aorta
25	chr4:53879600-53882200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:53879600-53885800	Weak transcription	HUVEC	blood vessel
27	chr4:53879600-53887600	Weak transcription	Colon Smooth Muscle	Colon
28	chr4:53879800-53882200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:53879800-53888600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr4:53879800-53890000	Weak transcription	GM12878-XiMat	blood
31	chr4:53880000-53882200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr4:53880000-53882200	Enhancers	NH-A	brain
33	chr4:53880200-53882200	Weak transcription	Fetal Stomach	stomach
34	chr4:53880400-53882600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:53880400-53883000	Enhancers	Muscle Satellite Cultured Cells	--
36	chr4:53880400-53885800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:53880400-53886000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:53880400-53891800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr4:53880600-53883000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:53880600-53888000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr4:53880800-53883800	Weak transcription	Pancreas	Pancrea
42	chr4:53880800-53884800	Weak transcription	Adipose Nuclei	Adipose
43	chr4:53880800-53892800	Weak transcription	Primary T cells from cord blood	blood
44	chr4:53881000-53885600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr4:53881000-53885800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr4:53881000-53886200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr4:53881400-53882600	Enhancers	HepG2	liver
48	chr4:53881400-53882600	Enhancers	HSMM	muscle
49	chr4:53881600-53882200	Enhancers	Brain Substantia Nigra	brain
50	chr4:53881600-53882200	Enhancers	Stomach Mucosa	stomach

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