Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1382083	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126715	0.83[EUR][1000 genomes]
rs2245157	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590776	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590790	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2590828	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2590830	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590831	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590832	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2616394	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2616397	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2616403	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2616406	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2616408	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2616413	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2616414	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898979	0.88[ASN][1000 genomes]
rs59445919	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62323723	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs728586	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15357	chr4:54591392-54603209	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54598400-54601000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:54598400-54601000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr4:54598400-54602600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:54599200-54600800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:54600000-54600800	Enhancers	HUVEC	blood vessel
6	chr4:54600000-54601400	Enhancers	Colon Smooth Muscle	Colon
7	chr4:54600000-54603400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:54600200-54600800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:54600200-54602400	Enhancers	HSMM	muscle
10	chr4:54600600-54600800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:54600600-54601000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:54600600-54601000	Enhancers	HSMMtube	muscle
13	chr4:54600600-54601200	Flanking Active TSS	NHDF-Ad	bronchial
14	chr4:54600600-54601200	Flanking Active TSS	NHLF	lung
15	chr4:54600600-54601200	Flanking Active TSS	Osteobl	bone
16	chr4:54600600-54601400	Flanking Active TSS	NH-A	brain
17	chr4:54600600-54601800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:54600600-54601800	Enhancers	HMEC	breast
19	chr4:54600600-54601800	Enhancers	NHEK	skin

Quick Search: