Variant report

Variant	rs73251225
Chromosome Location	chr12:8984726-8984727
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr12:8984608-8984985	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:8980074..8981757-chr12:8983950..8986667,2	MCF-7	breast:

Variant related genes	Relation type
A2ML1-AS1	TF binding region

rs_ID	r²[population]
rs56247214	1.00[AMR][1000 genomes]
rs56276359	1.00[AMR][1000 genomes]
rs57157785	0.97[AFR][1000 genomes]
rs58470477	1.00[AMR][1000 genomes]
rs59216232	1.00[AMR][1000 genomes]
rs60257637	1.00[AMR][1000 genomes]
rs61218851	1.00[AMR][1000 genomes]
rs61467238	1.00[AMR][1000 genomes]
rs61649019	1.00[AMR][1000 genomes]
rs61999314	1.00[AMR][1000 genomes]
rs6487351	1.00[AMR][1000 genomes]
rs7305990	1.00[AMR][1000 genomes]
rs7308487	1.00[AMR][1000 genomes]
rs74059967	1.00[AMR][1000 genomes]
rs74059979	1.00[AMR][1000 genomes]
rs74059988	1.00[AMR][1000 genomes]
rs74059997	1.00[AMR][1000 genomes]
rs74060002	1.00[AMR][1000 genomes]
rs74061807	1.00[AMR][1000 genomes]
rs74061811	1.00[AMR][1000 genomes]
rs7960815	1.00[AMR][1000 genomes]
rs7960980	1.00[AMR][1000 genomes]
rs7963289	1.00[AMR][1000 genomes]
rs7969179	1.00[AMR][1000 genomes]
rs7970045	1.00[AMR][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8976800-8985000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:8979000-8995400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:8979200-8985400	Enhancers	Placenta	Placenta
4	chr12:8980600-8985800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr12:8981600-8987200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr12:8981800-8986800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:8981800-8987400	Weak transcription	Esophagus	oesophagus
8	chr12:8982000-8985000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr12:8982200-9022000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr12:8982600-8988000	Weak transcription	K562	blood
11	chr12:8983200-8985800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr12:8983200-8986400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:8983400-9017600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr12:8983800-8985600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr12:8983800-8999800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:8984000-8985000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr12:8984000-8986600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr12:8984000-8987000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr12:8984200-8985200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr12:8984200-8985200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr12:8984400-8986600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr12:8984600-8985000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr12:8984600-8985200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr12:8984600-8985400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr12:8984600-8985400	Enhancers	Placenta Amnion	Placenta Amnion

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