Variant report

Variant	rs7325292
Chromosome Location	chr13:48702957-48702958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48701521..48703483-chr13:48708256..48709963,2	K562	blood:

Variant related genes	Relation type
ENSG00000224510	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2031775	0.87[EUR][1000 genomes]
rs7318370	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7983350	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48700400-48705600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:48701600-48704000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr13:48701800-48705000	Weak transcription	HMEC	breast
4	chr13:48701800-48705800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr13:48701800-48725800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:48702000-48703200	Weak transcription	Primary T cells from cord blood	blood
7	chr13:48702000-48703200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr13:48702000-48703200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr13:48702000-48703200	Weak transcription	Fetal Thymus	thymus
10	chr13:48702000-48703200	Weak transcription	Dnd41	blood
11	chr13:48702000-48703400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr13:48702000-48704800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr13:48702000-48705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr13:48702000-48705200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr13:48702000-48705200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr13:48702000-48705200	Weak transcription	NHEK	skin
17	chr13:48702000-48705600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr13:48702200-48703200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr13:48702200-48703400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr13:48702200-48703600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr13:48702200-48704800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr13:48702200-48705600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:48702200-48705600	Weak transcription	HepG2	liver
24	chr13:48702200-48713800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr13:48702600-48704400	Weak transcription	Brain Hippocampus Middle	brain
26	chr13:48702800-48703400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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