Variant report

Variant	rs73253183
Chromosome Location	chr8:87045986-87045987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:86209312..86210314-chr8:87045120..87046083,5	MCF-7	breast:
2	chr8:86209343..86210253-chr8:87045503..87046009,2	K562	blood:
3	chr8:86363334..86364626-chr8:87044525..87046442,21	MCF-7	breast:
4	chr8:86375382..86376006-chr8:87045172..87046083,3	MCF-7	breast:
5	chr8:86999252..87000082-chr8:87045223..87046040,9	MCF-7	breast:
6	chr8:86363443..86364082-chr8:87045149..87046001,2	K562	blood:

Variant related genes	Relation type
ENSG00000147614	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10086540	1.00[AMR][1000 genomes]
rs10088392	1.00[AMR][1000 genomes]
rs10088537	1.00[AMR][1000 genomes]
rs10090032	1.00[AMR][1000 genomes]
rs10094744	1.00[AMR][1000 genomes]
rs10107622	1.00[AMR][1000 genomes]
rs28684532	1.00[AMR][1000 genomes]
rs28861383	1.00[AMR][1000 genomes]
rs61453463	1.00[AMR][1000 genomes]
rs73263107	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758162	chr8:86405478-87055053	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759624	chr8:86405478-87055053	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv1028959	chr8:86835367-87142383	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv891146	chr8:86841229-87083747	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
8	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1034721	chr8:86977250-87131151	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv891148	chr8:86987886-87149808	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv891149	chr8:87023306-87167184	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv1034855	chr8:87040075-87168730	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87034000-87048000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:87043000-87048400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:87043600-87047600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:87043600-87047800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:87044800-87048000	Enhancers	Brain Substantia Nigra	brain
6	chr8:87045600-87046200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:87045600-87046800	Enhancers	Brain Anterior Caudate	brain
8	chr8:87045600-87046800	Enhancers	Brain Cingulate Gyrus	brain
9	chr8:87045600-87046800	Enhancers	Brain Hippocampus Middle	brain
10	chr8:87045600-87046800	Enhancers	HMEC	breast
11	chr8:87045600-87047000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr8:87045600-87047000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr8:87045600-87047000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr8:87045800-87046000	Enhancers	HSMM	muscle
15	chr8:87045800-87046400	Enhancers	Primary hematopoietic stem cells	blood
16	chr8:87045800-87046400	Enhancers	Brain Angular Gyrus	brain
17	chr8:87045800-87046400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr8:87045800-87046600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:87045800-87046600	Enhancers	NHEK	skin
20	chr8:87045800-87046800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:87045800-87047400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:87045800-87049200	Enhancers	Osteobl	bone

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