Variant report

Variant	rs73253381
Chromosome Location	chr6:165510534-165510535
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58796182	0.81[AFR][1000 genomes]
rs6926176	1.00[AMR][1000 genomes]
rs6926183	1.00[AMR][1000 genomes]
rs6941875	1.00[AMR][1000 genomes]
rs73253382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73255508	0.87[AFR][1000 genomes]
rs73255517	0.80[AFR][1000 genomes]
rs73255522	0.80[AFR][1000 genomes]
rs7753510	1.00[AMR][1000 genomes]
rs7760567	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886927	chr6:165368163-165644276	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165510000-165511200	Enhancers	HSMM	muscle
2	chr6:165510200-165510600	Enhancers	HSMMtube	muscle
3	chr6:165510200-165511000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:165510200-165511000	Enhancers	NH-A	brain
5	chr6:165510200-165511200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:165510200-165511200	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links