Variant report

Variant	rs73253393
Chromosome Location	chr6:165517793-165517794
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12526448	0.96[ASN][1000 genomes]
rs16897382	0.96[ASN][1000 genomes]
rs55702499	0.85[ASN][1000 genomes]
rs55741355	0.96[ASN][1000 genomes]
rs55841908	0.98[ASN][1000 genomes]
rs55974039	0.81[ASN][1000 genomes]
rs56010769	0.96[ASN][1000 genomes]
rs56083201	0.96[ASN][1000 genomes]
rs56103689	0.97[ASN][1000 genomes]
rs56126836	0.98[ASN][1000 genomes]
rs56176585	0.85[ASN][1000 genomes]
rs56303887	0.96[ASN][1000 genomes]
rs56317703	0.98[ASN][1000 genomes]
rs57602359	0.85[ASN][1000 genomes]
rs58954514	0.98[ASN][1000 genomes]
rs59152552	0.98[ASN][1000 genomes]
rs59866375	0.98[ASN][1000 genomes]
rs59967947	0.98[ASN][1000 genomes]
rs66541394	1.00[ASN][1000 genomes]
rs66668859	0.98[ASN][1000 genomes]
rs66769271	0.98[ASN][1000 genomes]
rs67198945	0.98[ASN][1000 genomes]
rs67792549	0.96[ASN][1000 genomes]
rs73026729	0.98[ASN][1000 genomes]
rs73026730	0.98[ASN][1000 genomes]
rs73026740	0.98[ASN][1000 genomes]
rs73026745	0.98[ASN][1000 genomes]
rs73026750	0.98[ASN][1000 genomes]
rs73026752	0.86[ASN][1000 genomes]
rs73026760	0.83[ASN][1000 genomes]
rs7747916	0.98[ASN][1000 genomes]
rs7748597	0.85[ASN][1000 genomes]
rs7762298	0.98[ASN][1000 genomes]
rs7769180	1.00[EUR][1000 genomes]
rs7774969	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886927	chr6:165368163-165644276	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165515200-165520600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:165516400-165519400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:165516400-165530800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links