The 2.0 version of rSNPBase

Variant report

Variant rs73254677
Chromosome Location chr5:115853642-115853643
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115828200-115865400 Weak transcription Primary T cells from cord blood blood
2 chr5:115839000-115855600 Weak transcription Left Ventricle heart
3 chr5:115839000-115856400 Weak transcription HSMMtube muscle
4 chr5:115839600-115859800 Weak transcription Colonic Mucosa Colon
5 chr5:115839800-115856400 Weak transcription Fetal Muscle Trunk muscle
6 chr5:115840600-115853800 Weak transcription Placenta Placenta
7 chr5:115841600-115858000 Enhancers iPS-15b Cell Line embryonic stem cell
8 chr5:115845800-115856800 Weak transcription Pancreas Pancrea
9 chr5:115845800-115867200 Weak transcription Right Ventricle heart
10 chr5:115846200-115855600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr5:115847200-115859800 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr5:115847800-115856800 Weak transcription Psoas Muscle Psoas
13 chr5:115848200-115854000 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr5:115848600-115864000 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr5:115849000-115854000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr5:115849600-115857000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr5:115850000-115854200 Genic enhancers ES-I3 Cell Line embryonic stem cell
18 chr5:115850200-115855200 Enhancers Brain Cingulate Gyrus brain
19 chr5:115850200-115855200 Enhancers Fetal Adrenal Gland Adrenal Gland
20 chr5:115850200-115855600 Enhancers Brain Substantia Nigra brain
21 chr5:115850400-115855200 Enhancers Brain Inferior Temporal Lobe brain
22 chr5:115850600-115855800 Enhancers iPS-18 Cell Line embryonic stem cell
23 chr5:115850600-115855800 Enhancers Cortex derived primary cultured neurospheres brain
24 chr5:115850800-115854400 Weak transcription Fetal Brain Female brain
25 chr5:115850800-115855200 Weak transcription Fetal Brain Male brain
26 chr5:115850800-115856400 Weak transcription Right Atrium heart
27 chr5:115850800-115856800 Weak transcription Ovary ovary
28 chr5:115851000-115855400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr5:115851000-115864000 Weak transcription Small Intestine intestine
30 chr5:115851400-115855000 Enhancers Brain Angular Gyrus brain
31 chr5:115851600-115857000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr5:115851800-115855200 Enhancers Brain Anterior Caudate brain
33 chr5:115851800-115856400 Weak transcription Fetal Stomach stomach
34 chr5:115852000-115854000 Weak transcription Duodenum Mucosa Duodenum
35 chr5:115852000-115854800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr5:115852000-115856600 Weak transcription Skeletal Muscle Male skeletal muscle
37 chr5:115852000-115857000 Weak transcription Rectal Smooth Muscle rectum
38 chr5:115852200-115856400 Weak transcription Adipose Nuclei Adipose
39 chr5:115852400-115854200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr5:115852400-115854200 Weak transcription Fetal Intestine Small intestine
41 chr5:115852400-115854800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
42 chr5:115852600-115854400 Weak transcription Fetal Kidney kidney
43 chr5:115852600-115855400 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
44 chr5:115852600-115856800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
45 chr5:115852600-115856800 Weak transcription Fetal Lung lung
46 chr5:115852800-115856600 Enhancers HUES64 Cell Line embryonic stem cell
47 chr5:115852800-115856600 Weak transcription Colon Smooth Muscle Colon
48 chr5:115853000-115857200 Genic enhancers HUES6 Cell Line embryonic stem cell
49 chr5:115853000-115858000 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr5:115853000-115858800 Weak transcription Stomach Smooth Muscle stomach

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015