Variant report

Variant	rs7325544
Chromosome Location	chr13:40029153-40029154
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10492734	0.87[EUR][1000 genomes]
rs10492735	0.85[EUR][1000 genomes]
rs10492736	0.85[EUR][1000 genomes]
rs10492737	0.85[EUR][1000 genomes]
rs12583299	0.87[EUR][1000 genomes]
rs12583316	0.87[EUR][1000 genomes]
rs12583320	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12583364	0.85[EUR][1000 genomes]
rs12583486	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12583593	0.85[EUR][1000 genomes]
rs12584059	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12584451	0.85[EUR][1000 genomes]
rs12584721	0.85[EUR][1000 genomes]
rs12586018	0.87[EUR][1000 genomes]
rs12873765	0.85[EUR][1000 genomes]
rs17059971	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17059988	0.85[EUR][1000 genomes]
rs17060000	0.85[EUR][1000 genomes]
rs17060022	0.87[EUR][1000 genomes]
rs17068651	0.85[EUR][1000 genomes]
rs35613729	0.87[EUR][1000 genomes]
rs57594426	0.83[EUR][1000 genomes]
rs59403463	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59798386	0.85[EUR][1000 genomes]
rs60199520	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73175139	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73175140	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73175141	0.85[EUR][1000 genomes]
rs73175149	0.87[EUR][1000 genomes]
rs7990728	0.85[EUR][1000 genomes]
rs7990910	0.85[EUR][1000 genomes]
rs7995349	0.85[EUR][1000 genomes]
rs7996490	0.85[EUR][1000 genomes]
rs7999971	0.85[EUR][1000 genomes]
rs8000564	0.85[EUR][1000 genomes]
rs9888507	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1011	chr13:40008962-40034177	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv561536	chr13:40015948-40043224	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3346508	chr13:40027802-40029800	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv2428792	chr13:40028048-40029641	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40022000-40029200	Weak transcription	Spleen	Spleen
2	chr13:40023400-40035000	Weak transcription	Aorta	Aorta
3	chr13:40025600-40033400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:40026600-40029400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:40026600-40029600	Weak transcription	HSMM	muscle
6	chr13:40026600-40033400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:40026800-40029200	Weak transcription	Lung	lung
8	chr13:40027200-40033200	Weak transcription	HSMMtube	muscle
9	chr13:40027400-40029400	Weak transcription	Brain Substantia Nigra	brain
10	chr13:40027400-40029600	Weak transcription	Fetal Lung	lung
11	chr13:40027400-40033400	Weak transcription	Fetal Muscle Leg	muscle
12	chr13:40027600-40029400	Weak transcription	Brain Anterior Caudate	brain
13	chr13:40027600-40030200	Weak transcription	Adipose Nuclei	Adipose
14	chr13:40028000-40029200	Weak transcription	Psoas Muscle	Psoas
15	chr13:40028000-40029400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:40028000-40029600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr13:40028000-40029800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr13:40028000-40030200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr13:40028200-40029200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:40028200-40029200	Weak transcription	Left Ventricle	heart
21	chr13:40028200-40029200	Weak transcription	Right Atrium	heart
22	chr13:40028200-40029200	Weak transcription	Right Ventricle	heart
23	chr13:40028200-40029600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr13:40028200-40029800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr13:40028200-40030000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr13:40028200-40030600	Enhancers	Fetal Heart	heart
27	chr13:40028200-40031200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:40028200-40032400	Weak transcription	Ovary	ovary
29	chr13:40028200-40032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr13:40028200-40033200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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