Variant report

Variant	rs732557
Chromosome Location	chr10:6653113-6653114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6614415..6616986-chr10:6653036..6655207,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10904616	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904623	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253614	0.81[EUR][1000 genomes]
rs11253645	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11253652	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11253653	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11253654	0.89[EUR][1000 genomes]
rs12571660	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12761476	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12767208	0.84[EUR][1000 genomes]
rs12783519	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2023400	0.84[CHB][hapmap];0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs34974051	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv437095	chr10:6649064-6666823	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2757365	chr10:6650991-6665349	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759730	chr10:6650991-6665349	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1047226	chr10:6651427-6664154	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv1835436	chr10:6651941-6664154	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv820451	chr10:6652116-6664424	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv1795177	chr10:6652184-6663835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv1818718	chr10:6652184-6663835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv1829311	chr10:6652184-6663835	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv8601	chr10:6652225-6665468	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6651000-6656400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:6651200-6661600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:6651400-6653600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:6651600-6654800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr10:6651600-6654800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:6651800-6655400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:6651800-6663200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:6652200-6655200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:6652200-6655200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:6652400-6653200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr10:6652400-6655000	Enhancers	NHEK	skin
12	chr10:6652400-6655200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:6652400-6655400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr10:6652400-6655400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:6652600-6653400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:6652600-6654200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr10:6652600-6654800	Enhancers	Primary hematopoietic stem cells	blood
18	chr10:6652600-6654800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr10:6652600-6654800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr10:6652600-6654800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr10:6652600-6654800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:6652600-6654800	Enhancers	HMEC	breast
23	chr10:6652600-6655000	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr10:6652600-6655000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:6652800-6653200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:6652800-6653200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr10:6652800-6653800	Enhancers	Thymus	Thymus
28	chr10:6652800-6655000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:6653000-6653200	Enhancers	Brain Angular Gyrus	brain
30	chr10:6653000-6653800	Enhancers	Fetal Thymus	thymus
31	chr10:6653000-6654600	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr10:6653000-6654800	Enhancers	Primary T cells from cord blood	blood
33	chr10:6653000-6654800	Enhancers	Dnd41	blood

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