Variant report

Variant	rs73256288
Chromosome Location	chr10:43370820-43370821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43370478..43372425-chr10:43586111..43588010,2	MCF-7	breast:
2	chr10:43369343..43371320-chr10:43469616..43472165,2	MCF-7	breast:
3	chr10:43366376..43368491-chr10:43369258..43371520,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234944	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11817310	0.87[EUR][1000 genomes]
rs1815717	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1815719	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56277628	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56369238	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57805551	0.87[EUR][1000 genomes]
rs58182364	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59335833	0.87[EUR][1000 genomes]
rs7080394	0.87[EUR][1000 genomes]
rs73252884	0.87[EUR][1000 genomes]
rs73252889	0.87[EUR][1000 genomes]
rs73252892	0.87[EUR][1000 genomes]
rs73254226	0.84[EUR][1000 genomes]
rs73256259	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73256269	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73256278	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73256281	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7921071	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
10	nsv947893	chr10:43368929-43376338	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43363200-43371400	Weak transcription	Fetal Heart	heart
2	chr10:43367200-43373000	Weak transcription	Spleen	Spleen
3	chr10:43369200-43372400	Enhancers	Lung	lung
4	chr10:43369800-43371200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:43370200-43372400	Enhancers	Fetal Lung	lung
6	chr10:43370200-43372400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr10:43370400-43371200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:43370600-43371000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:43370600-43371200	Enhancers	Colonic Mucosa	Colon
10	chr10:43370600-43371200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
11	chr10:43370600-43371400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:43370600-43371800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr10:43370800-43371000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:43370800-43371000	Bivalent Enhancer	Adipose Nuclei	Adipose
15	chr10:43370800-43371200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:43370800-43371200	Enhancers	Gastric	stomach
17	chr10:43370800-43371400	Bivalent Enhancer	Placenta	Placenta
18	chr10:43370800-43371400	Enhancers	NHDF-Ad	bronchial
19	chr10:43370800-43371800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:43370800-43371800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:43370800-43371800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr10:43370800-43371800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:43370800-43371800	Enhancers	Brain Anterior Caudate	brain
24	chr10:43370800-43371800	Enhancers	Brain Cingulate Gyrus	brain
25	chr10:43370800-43372400	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr10:43370800-43372600	Enhancers	Fetal Stomach	stomach

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