Variant report

Variant	rs73258104
Chromosome Location	chr12:4849956-4849957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10128887	1.00[AMR][1000 genomes]
rs11063349	1.00[AMR][1000 genomes]
rs11063350	1.00[AMR][1000 genomes]
rs13377683	1.00[AMR][1000 genomes]
rs34532073	1.00[AMR][1000 genomes]
rs34829532	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61752091	1.00[AMR][1000 genomes]
rs73255997	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832318	chr12:4655799-4875837	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1054218	chr12:4819576-4882667	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4832600-4851600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:4834000-4870200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:4836400-4872400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:4837200-4853800	Weak transcription	Brain Germinal Matrix	brain
5	chr12:4842600-4852200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:4845000-4853800	Weak transcription	Fetal Brain Male	brain
7	chr12:4845000-4872600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:4847000-4855200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr12:4848600-4854600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr12:4849400-4850200	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr12:4849600-4851400	Strong transcription	Fetal Brain Female	brain
12	chr12:4849800-4850200	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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