Variant report

Variant	rs73259343
Chromosome Location	chr14:31842226-31842227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17097835	1.00[AMR][1000 genomes]
rs17097846	1.00[AMR][1000 genomes]
rs56705300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57223850	1.00[AMR][1000 genomes]
rs60813837	1.00[AMR][1000 genomes]
rs6571431	1.00[AMR][1000 genomes]
rs7154326	1.00[AMR][1000 genomes]
rs7155531	1.00[AMR][1000 genomes]
rs7156116	1.00[AMR][1000 genomes]
rs7156917	1.00[AMR][1000 genomes]
rs73257381	0.83[AFR][1000 genomes]
rs73259308	1.00[AMR][1000 genomes]
rs73259312	1.00[AMR][1000 genomes]
rs73265200	1.00[AMR][1000 genomes]
rs73267204	1.00[AMR][1000 genomes]
rs73267207	1.00[AMR][1000 genomes]
rs73267208	1.00[AMR][1000 genomes]
rs73267228	1.00[AMR][1000 genomes]
rs73267229	1.00[AMR][1000 genomes]
rs73267271	1.00[AMR][1000 genomes]
rs73267272	1.00[AMR][1000 genomes]
rs73267283	1.00[AMR][1000 genomes]
rs73267293	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31771000-31888800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:31782200-31875200	Weak transcription	Gastric	stomach
3	chr14:31799800-31866800	Weak transcription	Esophagus	oesophagus
4	chr14:31801200-31883800	Weak transcription	Small Intestine	intestine
5	chr14:31801400-31862800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:31801400-31875600	Weak transcription	Brain Germinal Matrix	brain
7	chr14:31801600-31872400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:31801800-31862600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:31802400-31842800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:31802800-31872000	Weak transcription	Fetal Brain Male	brain
11	chr14:31803600-31872600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr14:31803800-31843600	Weak transcription	A549	lung
13	chr14:31803800-31852200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:31805600-31851800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:31806200-31850800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:31808000-31872600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr14:31809600-31872000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:31811800-31854600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr14:31812200-31857400	Weak transcription	Fetal Heart	heart
20	chr14:31812800-31852400	Weak transcription	Brain Angular Gyrus	brain
21	chr14:31813200-31872800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr14:31814600-31849200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr14:31816000-31888800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr14:31824600-31846000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr14:31825400-31847200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr14:31825600-31872800	Weak transcription	Fetal Kidney	kidney
27	chr14:31825600-31878600	Weak transcription	Pancreas	Pancrea
28	chr14:31825800-31843600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr14:31825800-31860200	Weak transcription	Psoas Muscle	Psoas
30	chr14:31826600-31847000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr14:31827000-31847200	Strong transcription	Adipose Nuclei	Adipose
32	chr14:31827400-31843400	Weak transcription	Right Ventricle	heart
33	chr14:31827400-31847400	Weak transcription	NHLF	lung
34	chr14:31827400-31874400	Weak transcription	Spleen	Spleen
35	chr14:31827600-31846400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr14:31828000-31866800	Weak transcription	Colonic Mucosa	Colon
37	chr14:31828200-31852600	Weak transcription	Fetal Brain Female	brain
38	chr14:31828400-31844000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr14:31828400-31849000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr14:31830200-31842400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:31830600-31862000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:31832200-31844000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr14:31832400-31844600	Weak transcription	Aorta	Aorta
44	chr14:31833800-31854400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr14:31836800-31847000	Strong transcription	Duodenum Mucosa	Duodenum
46	chr14:31837000-31853800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr14:31837000-31858400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:31837200-31842400	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr14:31837200-31846800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr14:31837200-31852800	Strong transcription	Placenta	Placenta

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