Variant report
| Variant | rs73260119 |
|---|---|
| Chromosome Location | chr4:27969500-27969501 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RP11-180C1.1.1-1 | chr4:27969345-27969549 | XLOC_003916 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs11933574 | 0.83[ASN][1000 genomes] |
| rs16880031 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28744507 | 0.83[ASN][1000 genomes] |
| rs34434590 | 0.83[ASN][1000 genomes] |
| rs4565069 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4692268 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6830015 | 0.83[ASN][1000 genomes] |
| rs73260126 | 0.83[ASN][1000 genomes] |
| rs73260128 | 0.83[ASN][1000 genomes] |
| rs73260130 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013877 | chr4:27539626-28051576 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009464 | chr4:27943970-27992849 | ZNF genes & repeats Active TSS Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
