Variant report

Variant	rs73261392
Chromosome Location	chr5:147262480-147262481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10065601	0.80[AFR][1000 genomes]
rs10071367	0.88[AFR][1000 genomes]
rs10075872	0.80[AFR][1000 genomes]
rs10075900	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476889	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10477353	0.97[AFR][1000 genomes]
rs10477354	0.91[AFR][1000 genomes]
rs11505126	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12171507	0.94[AFR][1000 genomes]
rs13355947	0.94[AFR][1000 genomes]
rs13356314	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13360221	0.91[AFR][1000 genomes]
rs13435996	0.97[AFR][1000 genomes]
rs13436526	0.97[AFR][1000 genomes]
rs28702991	0.82[AFR][1000 genomes]
rs56384736	0.80[AFR][1000 genomes]
rs6881482	0.89[AFR][1000 genomes]
rs73261368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73261387	0.82[AFR][1000 genomes]
rs73263243	0.89[AFR][1000 genomes]
rs73263257	0.87[AFR][1000 genomes]
rs73263261	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021356	chr5:147103627-147310531	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1033907	chr5:147109014-147309076	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv537916	chr5:147109014-147309076	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv933308	chr5:147173804-147269006	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147259800-147267200	Enhancers	Fetal Heart	heart
2	chr5:147260400-147262600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:147261000-147262600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:147261400-147267400	Weak transcription	Aorta	Aorta
5	chr5:147262000-147263000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:147262200-147262600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:147262200-147262600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:147262200-147262600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr5:147262200-147262800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr5:147262200-147262800	Genic enhancers	H1 Cell Line	embryonic stem cell
11	chr5:147262200-147262800	Genic enhancers	H9 Cell Line	embryonic stem cell
12	chr5:147262200-147262800	Genic enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:147262200-147262800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:147262200-147263000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:147262400-147262600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr5:147262400-147262800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:147262400-147262800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:147262400-147262800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr5:147262400-147262800	Enhancers	Left Ventricle	heart
20	chr5:147262400-147263000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:147262400-147263000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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