Variant report

Variant	rs73261818
Chromosome Location	chr8:86021249-86021250
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:86019469..86022152-chr9:100745432..100747844,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73261817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73261883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73261894	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1033160	chr8:86010643-86030560	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86020000-86024400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:86020000-86057400	Weak transcription	Small Intestine	intestine
3	chr8:86020200-86021400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr8:86020200-86024200	Weak transcription	HSMM	muscle
5	chr8:86020200-86024600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:86020200-86024600	Weak transcription	Ovary	ovary
7	chr8:86020200-86025800	Weak transcription	Right Ventricle	heart
8	chr8:86020200-86032600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:86020200-86042200	Weak transcription	Left Ventricle	heart
10	chr8:86020400-86021600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr8:86020400-86021600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr8:86020400-86032400	Weak transcription	Fetal Thymus	thymus
13	chr8:86020400-86034400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:86020400-86043800	Weak transcription	NH-A	brain
15	chr8:86020400-86044400	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:86020400-86048400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:86020400-86048400	Weak transcription	Fetal Stomach	stomach
18	chr8:86020400-86049000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr8:86020400-86054800	Weak transcription	Lung	lung
20	chr8:86020400-86055400	Weak transcription	Fetal Kidney	kidney
21	chr8:86020400-86055400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr8:86020400-86056400	Weak transcription	Gastric	stomach
23	chr8:86020400-86057400	Weak transcription	Aorta	Aorta
24	chr8:86020400-86062600	Weak transcription	Pancreas	Pancrea
25	chr8:86020600-86021400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:86020600-86021600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr8:86020600-86022000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr8:86020600-86022400	Weak transcription	Fetal Intestine Large	intestine
29	chr8:86020600-86024800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr8:86020600-86026200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr8:86020600-86029400	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr8:86020600-86031800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr8:86020600-86031800	Weak transcription	HMEC	breast
34	chr8:86020600-86032000	Weak transcription	NHEK	skin
35	chr8:86020600-86032400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:86020600-86034400	Weak transcription	Liver	Liver
37	chr8:86020600-86039200	Weak transcription	Adipose Nuclei	Adipose
38	chr8:86020600-86041600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr8:86020600-86044200	Weak transcription	Primary T cells from cord blood	blood
40	chr8:86020600-86045800	Weak transcription	Thymus	Thymus
41	chr8:86020600-86048800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr8:86020600-86049000	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr8:86020600-86049200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr8:86020600-86052400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr8:86020600-86054600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr8:86020600-86058800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr8:86020800-86021400	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr8:86020800-86023400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr8:86020800-86023400	Weak transcription	NHLF	lung
50	chr8:86020800-86024800	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links