Variant report

Variant	rs73262030
Chromosome Location	chr8:60250846-60250847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4132140	0.85[AMR][1000 genomes]
rs56791941	0.91[AMR][1000 genomes]
rs59843391	0.91[AMR][1000 genomes]
rs6994749	0.91[AMR][1000 genomes]
rs7016730	1.00[EUR][1000 genomes]
rs73260059	0.91[AMR][1000 genomes]
rs73262007	0.91[AMR][1000 genomes]
rs73262012	0.91[AMR][1000 genomes]
rs73262023	0.88[AMR][1000 genomes]
rs7825114	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60249800-60251000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr8:60250400-60251200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:60250400-60252800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:60250800-60251000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:60250800-60251200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:60250800-60252600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:60250800-60252600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr8:60250800-60253000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:60250800-60253200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:60250800-60253200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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