Variant report

Variant	rs73262626
Chromosome Location	chr10:43047469-43047470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:51)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:51 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr10:43047423-43047809	K562	blood:	n/a	n/a
2	HEY1	chr10:43047410-43048408	K562	blood:	n/a	n/a
3	ZNF263	chr10:43046914-43048474	HEK293-T-REx	kidney:	n/a	n/a
4	MAX	chr10:43047005-43048774	K562	blood:	n/a	n/a
5	MAX	chr10:43047362-43048610	SK-N-SH	brain:	n/a	n/a
6	MAX	chr10:43047356-43048854	ECC-1	luminal epithelium:	n/a	n/a
7	SREBP1	chr10:43047449-43048812	GM12878	blood:	n/a	n/a
8	KAP1	chr10:43047250-43048854	HEK293	kidney:	n/a	n/a
9	CHD2	chr10:43047404-43047977	K562	blood:	n/a	n/a
10	E2F6	chr10:43047067-43047999	K562	blood:	n/a	chr10:43047814-43047825
11	REST	chr10:43047462-43048681	H1-neurons	neurons:	n/a	chr10:43048484-43048502
12	TEAD4	chr10:43047441-43048483	K562	blood:	n/a	n/a
13	MAX	chr10:43047409-43048544	MCF-7	breast:	n/a	n/a
14	MAZ	chr10:43047449-43047471	GM12878	blood:	n/a	n/a
15	MAX	chr10:43047356-43048073	ECC-1	luminal epithelium:	n/a	n/a
16	MAX	chr10:43047451-43048038	H1-hESC	embryonic stem cell:	n/a	n/a
17	BHLHE40	chr10:43047425-43048669	GM12878	blood:	n/a	n/a
18	MXI1	chr10:43047264-43048754	HepG2	liver:	n/a	n/a
19	E2F6	chr10:43047097-43048440	K562	blood:	n/a	chr10:43047814-43047825
20	POLR2A	chr10:43047385-43048647	GM12878	blood:	n/a	n/a
21	ZMIZ1	chr10:43047430-43047727	K562	blood:	n/a	n/a
22	POLR2A	chr10:43047447-43048667	GM12892	blood:	n/a	n/a
23	MAX	chr10:43047347-43048867	A549	lung:	n/a	n/a
24	MAX	chr10:43047384-43048005	H1-hESC	embryonic stem cell:	n/a	n/a
25	PML	chr10:43047402-43048567	GM12878	blood:	n/a	n/a
26	MAX	chr10:43047225-43048899	HepG2	liver:	n/a	n/a
27	MYC	chr10:43047468-43047686	MCF10A-Er-Src	breast:	n/a	n/a
28	STAT1	chr10:43047444-43048606	GM12878	blood:	n/a	n/a
29	SETDB1	chr10:43047451-43048791	K562	blood:	n/a	n/a
30	CBX3	chr10:43047384-43048810	K562	blood:	n/a	n/a
31	RCOR1	chr10:43047437-43048893	GM12878	blood:	n/a	n/a
32	POLR2A	chr10:43047167-43048799	K562	blood:	n/a	n/a
33	MAX	chr10:43047456-43048740	GM12878	blood:	n/a	n/a
34	MYC	chr10:43047414-43048547	K562	blood:	n/a	n/a
35	MYC	chr10:43047414-43048632	K562	blood:	n/a	n/a
36	ELF1	chr10:43047303-43048874	GM12878	blood:	n/a	chr10:43048602-43048613
37	POLR2A	chr10:43047372-43048765	Raji	blood:	n/a	n/a
38	MAX	chr10:43047334-43048819	SK-N-SH	brain:	n/a	n/a
39	MAX	chr10:43047206-43049183	HepG2	liver:	n/a	n/a
40	E2F6	chr10:43047265-43048191	A549	lung:	n/a	chr10:43047814-43047825
41	WRNIP1	chr10:43047448-43047964	GM12878	blood:	n/a	n/a
42	MAX	chr10:43047234-43048898	A549	lung:	n/a	n/a
43	MYC	chr10:43047460-43048550	MCF10A-Er-Src	breast:	n/a	n/a
44	MYC	chr10:43047415-43048700	K562	blood:	n/a	n/a
45	MAX	chr10:43047388-43048464	K562	blood:	n/a	n/a
46	RCOR1	chr10:43047365-43048735	K562	blood:	n/a	n/a
47	MAX	chr10:43047426-43048544	HepG2	liver:	n/a	n/a
48	MAX	chr10:43047374-43048032	K562	blood:	n/a	n/a
49	MAX	chr10:43047307-43048863	MCF-7	breast:	n/a	n/a
50	E2F6	chr10:43047408-43048314	H1-hESC	embryonic stem cell:	n/a	chr10:43047814-43047825

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:43046301..43049301-chr10:43278095..43279962,3	K562	blood:
2	chr10:43043951..43049889-chr10:43132519..43135803,5	K562	blood:
3	chr10:43046145..43048386-chr10:43132522..43135382,4	MCF-7	breast:

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF33B-4	chr10:43047438-43047728	NONHSAT012887
2	lnc-ZNF33B-4	chr10:43047025-43048044	NONHSAT012891
3	lnc-ZNF33B-4	chr10:43047438-43047739	NONHSAT012892
4	lnc-ZNF33B-4	chr10:43047025-43047739	NONHSAT012893
5	lnc-ZNF33B-4	chr10:43047438-43047899	NONHSAT012895
6	lnc-ZNF33B-4	chr10:43047025-43048236	NONHSAT012894
7	lnc-ZNF33B-4	chr10:43047438-43047728	NONHSAT012896
8	lnc-ZNF33B-4	chr10:43047438-43047550	NONHSAT012902
9	lnc-ZNF33B-4	chr10:43047021-43048044	NONHSAT012901

No data

Variant related genes	Relation type
FXYD6P1	TF binding region
ENSG00000272373	Chromatin interaction
ENSG00000196693	Chromatin interaction
ENSG00000165733	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12098705	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1255393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17156651	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs289189	1.00[EUR][1000 genomes]
rs289190	1.00[EUR][1000 genomes]
rs289191	1.00[EUR][1000 genomes]
rs289192	1.00[EUR][1000 genomes]
rs3210295	1.00[EUR][1000 genomes]
rs58540235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60716998	1.00[EUR][1000 genomes]
rs6593369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7098427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73256674	1.00[EUR][1000 genomes]
rs73260503	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73260526	1.00[EUR][1000 genomes]
rs73262343	1.00[EUR][1000 genomes]
rs73262637	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73262646	1.00[EUR][1000 genomes]
rs73262650	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73266617	1.00[EUR][1000 genomes]
rs73266622	1.00[EUR][1000 genomes]
rs73266638	1.00[EUR][1000 genomes]
rs73266643	1.00[EUR][1000 genomes]
rs73266645	0.80[AFR][1000 genomes]
rs73266646	1.00[EUR][1000 genomes]
rs7897794	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7897900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7910466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817455	chr10:42607635-43151812	Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv550670	chr10:42725663-43089965	Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895054	chr10:42761931-43068841	ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv895064	chr10:42783481-43243325	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv466877	chr10:42794125-43066414	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv550683	chr10:42794125-43066414	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
10	nsv895071	chr10:42864138-43066414	ZNF genes & repeats Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv895073	chr10:42884169-43066505	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
13	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
14	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
15	nsv469725	chr10:42965130-43178323	Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
16	nsv482513	chr10:42965130-43178323	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
17	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
18	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
19	nsv948326	chr10:43045385-43047970	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv8625	chr10:43046814-43052296	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43046200-43048000	Flanking Active TSS	Dnd41	blood
2	chr10:43046600-43047800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
3	chr10:43046600-43047800	Flanking Active TSS	Fetal Brain Female	brain
4	chr10:43046800-43047600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:43046800-43047600	Flanking Active TSS	Brain Anterior Caudate	brain
6	chr10:43046800-43047600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr10:43046800-43047600	Flanking Active TSS	HepG2	liver
8	chr10:43046800-43047800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr10:43046800-43047800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:43046800-43047800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:43046800-43047800	Flanking Active TSS	Brain Angular Gyrus	brain
12	chr10:43046800-43047800	Flanking Active TSS	Brain Cingulate Gyrus	brain
13	chr10:43046800-43047800	Flanking Active TSS	Brain Germinal Matrix	brain
14	chr10:43046800-43047800	Flanking Active TSS	GM12878-XiMat	blood
15	chr10:43046800-43047800	Flanking Active TSS	Hela-S3	cervix
16	chr10:43046800-43048000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:43046800-43048000	Flanking Active TSS	K562	blood
18	chr10:43047000-43047600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:43047000-43047600	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr10:43047000-43047600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr10:43047000-43047600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr10:43047000-43047600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:43047000-43047600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:43047000-43047600	Flanking Active TSS	Brain Hippocampus Middle	brain
25	chr10:43047000-43047600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:43047000-43047600	Flanking Active TSS	Brain Substantia Nigra	brain
27	chr10:43047000-43047600	Flanking Active TSS	Gastric	stomach
28	chr10:43047000-43047600	Flanking Active TSS	Ovary	ovary
29	chr10:43047000-43047600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
30	chr10:43047000-43047600	Flanking Active TSS	NHDF-Ad	bronchial
31	chr10:43047000-43047600	Flanking Active TSS	NHEK	skin
32	chr10:43047000-43047800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr10:43047000-43047800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:43047000-43047800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr10:43047000-43047800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
36	chr10:43047000-43047800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:43047000-43047800	Flanking Active TSS	Duodenum Mucosa	Duodenum
38	chr10:43047000-43047800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr10:43047000-43047800	Flanking Active TSS	Fetal Brain Male	brain
40	chr10:43047000-43047800	Flanking Active TSS	Fetal Thymus	thymus
41	chr10:43047000-43047800	Flanking Active TSS	Pancreas	Pancrea
42	chr10:43047000-43047800	Flanking Active TSS	Rectal Smooth Muscle	rectum
43	chr10:43047000-43047800	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr10:43047000-43048000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr10:43047000-43048000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr10:43047000-43048000	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr10:43047000-43048000	Flanking Active TSS	Liver	Liver
48	chr10:43047000-43048000	Flanking Active TSS	Fetal Muscle Trunk	muscle
49	chr10:43047000-43048000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr10:43047000-43048000	Flanking Active TSS	HMEC	breast

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