Variant report

Variant	rs73262953
Chromosome Location	chr10:44055296-44055297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44053796..44056981-chr10:44062338..44065118,5	MCF-7	breast:
2	chr10:44039393..44042249-chr10:44054829..44056405,2	K562	blood:
3	chr10:44053306..44056176-chr10:44066211..44067733,2	K562	blood:

Variant related genes	Relation type
ENSG00000196793	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56926276	1.00[AFR][1000 genomes]
rs58973888	1.00[AFR][1000 genomes]
rs73254828	1.00[AFR][1000 genomes]
rs73254837	1.00[AFR][1000 genomes]
rs73262932	1.00[AFR][1000 genomes]
rs73262946	1.00[AFR][1000 genomes]
rs73262955	1.00[AFR][1000 genomes]
rs73262956	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798523	chr10:44051698-44070754	Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44049000-44057200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr10:44049400-44055800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr10:44049600-44055400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:44050000-44055400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr10:44050000-44057800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:44050000-44058600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr10:44050400-44069200	Weak transcription	Fetal Thymus	thymus
8	chr10:44050600-44055400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr10:44050600-44055600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:44050600-44056000	ZNF genes & repeats	Liver	Liver
11	chr10:44050600-44056200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
12	chr10:44050600-44056400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:44050800-44055600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:44050800-44056000	ZNF genes & repeats	K562	blood
15	chr10:44050800-44056800	ZNF genes & repeats	Primary T cells from cord blood	blood
16	chr10:44051200-44056800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:44051400-44055400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
18	chr10:44051800-44055600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
19	chr10:44052400-44055400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
20	chr10:44053000-44069000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr10:44053000-44069200	Weak transcription	Thymus	Thymus
22	chr10:44053200-44062600	Weak transcription	Brain Germinal Matrix	brain
23	chr10:44053200-44062800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:44053200-44066600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr10:44053200-44068400	Weak transcription	NHDF-Ad	bronchial
26	chr10:44053200-44068800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:44053200-44068800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:44053200-44068800	Weak transcription	Hela-S3	cervix
29	chr10:44053200-44068800	Weak transcription	HSMMtube	muscle
30	chr10:44053400-44062800	Weak transcription	Adipose Nuclei	Adipose
31	chr10:44053400-44068800	Weak transcription	Brain Substantia Nigra	brain
32	chr10:44053600-44055400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:44053600-44055800	Strong transcription	Ovary	ovary
34	chr10:44053600-44057000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:44053600-44057800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:44053600-44058200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:44053600-44059200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:44053600-44059200	Weak transcription	Pancreas	Pancrea
39	chr10:44053600-44059200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:44053600-44061600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr10:44053600-44062600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:44053600-44062800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:44053600-44064400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:44053600-44064600	Weak transcription	NHLF	lung
45	chr10:44053600-44068200	Weak transcription	Fetal Kidney	kidney
46	chr10:44053600-44068600	Weak transcription	NH-A	brain
47	chr10:44053600-44068800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr10:44053600-44068800	Weak transcription	Psoas Muscle	Psoas
49	chr10:44053600-44068800	Weak transcription	Right Ventricle	heart
50	chr10:44053600-44069000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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