Variant report

Variant	rs73263358
Chromosome Location	chr5:120190242-120190243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:120182804..120185937-chr5:120188813..120191326,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10447271	1.00[AMR][1000 genomes]
rs1449150	1.00[AMR][1000 genomes]
rs1449151	1.00[AMR][1000 genomes]
rs17146990	1.00[AMR][1000 genomes]
rs1839248	1.00[AMR][1000 genomes]
rs58431348	1.00[AMR][1000 genomes]
rs58623043	1.00[AMR][1000 genomes]
rs60089882	1.00[AMR][1000 genomes]
rs60255414	1.00[AMR][1000 genomes]
rs60282447	1.00[AMR][1000 genomes]
rs61032809	1.00[AMR][1000 genomes]
rs6876590	1.00[AMR][1000 genomes]
rs73254844	1.00[AMR][1000 genomes]
rs73254858	1.00[AMR][1000 genomes]
rs73254861	1.00[AMR][1000 genomes]
rs73254863	1.00[AMR][1000 genomes]
rs73254864	1.00[AMR][1000 genomes]
rs73254865	1.00[AMR][1000 genomes]
rs73254867	1.00[AMR][1000 genomes]
rs73254870	1.00[AMR][1000 genomes]
rs73254872	1.00[AMR][1000 genomes]
rs73254874	1.00[AMR][1000 genomes]
rs73254876	1.00[AMR][1000 genomes]
rs73260720	1.00[AMR][1000 genomes]
rs73260723	1.00[AMR][1000 genomes]
rs73260726	1.00[AMR][1000 genomes]
rs73260740	1.00[AMR][1000 genomes]
rs73262984	1.00[AMR][1000 genomes]
rs73263317	1.00[AMR][1000 genomes]
rs73263341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73263347	1.00[AMR][1000 genomes]
rs73263356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264905	1.00[AFR][1000 genomes]
rs73264914	1.00[AMR][1000 genomes]
rs73264916	1.00[AMR][1000 genomes]
rs73265332	1.00[AMR][1000 genomes]
rs73265333	1.00[AMR][1000 genomes]
rs73265369	1.00[AMR][1000 genomes]
rs73265371	1.00[AMR][1000 genomes]
rs73265374	1.00[AMR][1000 genomes]
rs73265379	1.00[AMR][1000 genomes]
rs73265385	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031453	chr5:119843593-120393038	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv599603	chr5:119953529-120317035	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949415	chr5:119957645-120459183	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1030613	chr5:119980213-120301205	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1029773	chr5:120018166-120213999	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1031403	chr5:120044993-120222128	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1033992	chr5:120045247-120232155	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1034523	chr5:120046649-120213999	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv537886	chr5:120046649-120213999	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1032430	chr5:120046652-120222128	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv599604	chr5:120046798-120223491	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1025535	chr5:120050070-120222128	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv3369974	chr5:120051746-120319085	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv830466	chr5:120086428-120259016	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv882791	chr5:120100225-120293328	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv524748	chr5:120104848-120219340	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv1015280	chr5:120163808-120306848	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	nsv1025157	chr5:120175806-120307539	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	nsv882792	chr5:120183146-120296787	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv2763889	chr5:120186998-120247295	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:120189000-120190400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:120189000-120190400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:120189400-120190400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:120189400-120190600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:120189400-120190800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:120190200-120190800	Weak transcription	H9 Cell Line	embryonic stem cell

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