Variant report

Variant	rs73263938
Chromosome Location	chr7:14376196-14376197
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11971288	1.00[EUR][1000 genomes]
rs17150053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17167979	1.00[EUR][1000 genomes]
rs62444568	0.87[AFR][1000 genomes]
rs6967451	1.00[AMR][1000 genomes]
rs71548070	1.00[AMR][1000 genomes]
rs73263934	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263939	1.00[AMR][1000 genomes]
rs7800171	1.00[EUR][1000 genomes]
rs7803870	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14368800-14379000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:14375400-14376400	Enhancers	Liver	Liver
3	chr7:14375600-14376400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:14376000-14380000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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