Variant report

Variant	rs73264602
Chromosome Location	chr5:147805490-147805491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr5:147805481-147805699	K562	blood:	n/a	n/a
2	MAFK	chr5:147805397-147805795	K562	blood:	n/a	chr5:147805576-147805585 chr5:147805576-147805586
3	POLR2A	chr5:147805287-147806507	K562	blood:	n/a	n/a
4	MAFF	chr5:147805384-147805772	K562	blood:	n/a	chr5:147805575-147805589
5	RCOR1	chr5:147805387-147805745	K562	blood:	n/a	n/a
6	JUND	chr5:147805392-147805733	K562	blood:	n/a	chr5:147805576-147805588 chr5:147805579-147805586 chr5:147805577-147805587 chr5:147805578-147805586 chr5:147805578-147805586
7	ARID3A	chr5:147805330-147805648	K562	blood:	n/a	n/a
8	MAZ	chr5:147805417-147805625	K562	blood:	n/a	chr5:147805577-147805586
9	BCL3	chr5:147805439-147805703	GM12878	blood:	n/a	n/a
10	TBL1XR1	chr5:147805422-147805552	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:147802471..147805934-chr5:147811042..147813269,3	MCF-7	breast:
2	chr5:147777173..147781604-chr5:147805293..147807681,4	MCF-7	breast:
3	chr5:147803535..147805527-chr5:147810502..147812657,2	K562	blood:

Variant related genes	Relation type
FBXO38	TF binding region
ENSG00000145868	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60362479	1.00[AFR][1000 genomes]
rs73264579	0.89[AFR][1000 genomes]
rs73264581	0.85[AFR][1000 genomes]
rs73264600	1.00[AFR][1000 genomes]
rs73266417	0.95[AFR][1000 genomes]
rs73266432	0.82[AFR][1000 genomes]
rs73266439	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830516	chr5:147801104-147966093	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147764400-147806800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:147772600-147808000	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr5:147772600-147808800	Strong transcription	Dnd41	blood
4	chr5:147772800-147809400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:147773600-147808800	Strong transcription	Fetal Thymus	thymus
6	chr5:147774000-147809400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:147774200-147809000	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr5:147774400-147807800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:147777200-147808000	Strong transcription	Fetal Muscle Trunk	muscle
10	chr5:147777400-147823200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:147777600-147807600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr5:147777600-147809600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:147778000-147807600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr5:147778400-147808200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr5:147778400-147809400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:147778400-147823400	Strong transcription	Placenta	Placenta
17	chr5:147778600-147809400	Strong transcription	Liver	Liver
18	chr5:147778800-147808200	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr5:147778800-147809400	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr5:147778800-147822000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:147779000-147808800	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:147779000-147809200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:147779000-147814400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr5:147779200-147808800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr5:147780800-147808600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr5:147781800-147809000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:147781800-147809000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr5:147781800-147809800	Strong transcription	Adipose Nuclei	Adipose
29	chr5:147781800-147823600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr5:147782600-147808400	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr5:147782600-147822800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr5:147783800-147808000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr5:147783800-147809600	Strong transcription	Primary B cells from cord blood	blood
34	chr5:147784200-147823600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr5:147784400-147809000	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr5:147784400-147824600	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr5:147784800-147808400	Strong transcription	Primary B cells from peripheral blood	blood
38	chr5:147790000-147808600	Strong transcription	Primary T cells from cord blood	blood
39	chr5:147790000-147809400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:147790200-147809000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:147794200-147807000	Strong transcription	Left Ventricle	heart
42	chr5:147795000-147808000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr5:147795400-147808800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr5:147796400-147807600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr5:147797000-147808000	Strong transcription	Duodenum Mucosa	Duodenum
46	chr5:147797000-147808600	Strong transcription	HSMM	muscle
47	chr5:147797000-147832400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr5:147797200-147808000	Strong transcription	Rectal Smooth Muscle	rectum
49	chr5:147797200-147808800	Strong transcription	HUVEC	blood vessel
50	chr5:147797600-147826400	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links