Variant report

Variant	rs73264790
Chromosome Location	chr10:43083157-43083158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs60716998	0.86[AFR][1000 genomes]
rs6593439	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73260526	0.86[AFR][1000 genomes]
rs73262646	0.86[AFR][1000 genomes]
rs73266615	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266617	0.95[AFR][1000 genomes]
rs73266622	0.95[AFR][1000 genomes]
rs73266627	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266638	0.95[AFR][1000 genomes]
rs73266643	0.95[AFR][1000 genomes]
rs73266645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266646	0.95[AFR][1000 genomes]
rs73266651	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817455	chr10:42607635-43151812	Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv550670	chr10:42725663-43089965	Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895064	chr10:42783481-43243325	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
9	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	nsv469725	chr10:42965130-43178323	Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv482513	chr10:42965130-43178323	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
13	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
14	nsv975073	chr10:43079185-43083666	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43076000-43088400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:43076600-43083400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:43076800-43087000	Weak transcription	Fetal Heart	heart
4	chr10:43077600-43088000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:43077800-43109600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:43080000-43083200	Weak transcription	NHEK	skin
7	chr10:43080000-43083400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:43080600-43086600	Weak transcription	Stomach Mucosa	stomach
9	chr10:43080800-43088000	Weak transcription	Right Ventricle	heart
10	chr10:43081000-43083200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:43081000-43087200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:43081000-43087800	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:43081000-43087800	Weak transcription	Psoas Muscle	Psoas
14	chr10:43081200-43083400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:43081400-43085400	Strong transcription	Primary B cells from cord blood	blood
16	chr10:43081400-43087800	Weak transcription	Brain Anterior Caudate	brain
17	chr10:43081600-43083200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:43081600-43083200	Weak transcription	Dnd41	blood
19	chr10:43081800-43083200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:43081800-43086400	Weak transcription	Fetal Muscle Leg	muscle
21	chr10:43081800-43086600	Weak transcription	HepG2	liver
22	chr10:43081800-43086800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:43081800-43092000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
24	chr10:43082000-43083200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:43082000-43083800	Strong transcription	Primary T cells from cord blood	blood
26	chr10:43082000-43084000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:43082000-43084400	ZNF genes & repeats	Lung	lung
28	chr10:43082000-43084400	Strong transcription	Ovary	ovary
29	chr10:43082000-43085200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr10:43082000-43085600	Strong transcription	Fetal Brain Female	brain
31	chr10:43082000-43092200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:43082200-43083200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr10:43082200-43083400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
34	chr10:43082200-43084000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
35	chr10:43082200-43084400	Strong transcription	Brain Germinal Matrix	brain
36	chr10:43082200-43084400	Strong transcription	Fetal Lung	lung
37	chr10:43082200-43092600	ZNF genes & repeats	Liver	Liver
38	chr10:43082400-43083600	ZNF genes & repeats	Pancreas	Pancrea
39	chr10:43082400-43084000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:43082400-43084400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:43082400-43084400	Strong transcription	Adipose Nuclei	Adipose
42	chr10:43082400-43084400	Strong transcription	Placenta	Placenta
43	chr10:43082400-43084400	ZNF genes & repeats	Gastric	stomach
44	chr10:43082400-43084400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
45	chr10:43082400-43085000	ZNF genes & repeats	Aorta	Aorta
46	chr10:43082400-43085000	ZNF genes & repeats	Fetal Intestine Small	intestine
47	chr10:43082400-43086000	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr10:43082600-43084400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:43082600-43084400	Strong transcription	Fetal Stomach	stomach
50	chr10:43082600-43084800	Strong transcription	Stomach Smooth Muscle	stomach

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