Variant report

Variant	rs73264825
Chromosome Location	chr20:14202181-14202182
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:14199868..14203458-chr20:14204053..14207149,3	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16994432	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57031259	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6033934	0.86[EUR][1000 genomes]
rs6042658	0.82[EUR][1000 genomes]
rs6074712	0.85[ASN][1000 genomes]
rs6079372	0.85[ASN][1000 genomes]
rs6079381	0.87[EUR][1000 genomes]
rs6079383	0.87[EUR][1000 genomes]
rs60877902	0.87[EUR][1000 genomes]
rs6105232	0.82[ASN][1000 genomes]
rs6110214	0.81[ASN][1000 genomes]
rs6514496	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7268327	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7269177	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7275116	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73264830	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8124679	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1057486	chr20:14077828-14469129	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv532514	chr20:14097780-14288315	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1066235	chr20:14173771-14389050	Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv458872	chr20:14189779-14317390	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv470540	chr20:14189779-14317390	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv585439	chr20:14189779-14317390	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1066105	chr20:14201909-14272115	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:14200200-14202200	Enhancers	HMEC	breast
2	chr20:14200400-14202400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr20:14200400-14203200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr20:14200400-14204000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr20:14200600-14202200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr20:14200600-14205000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr20:14200800-14206600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr20:14201000-14204600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr20:14201000-14206200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr20:14201200-14202200	Enhancers	Hela-S3	cervix
11	chr20:14201200-14206600	Weak transcription	A549	lung
12	chr20:14201400-14202400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr20:14201400-14202600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr20:14201400-14204400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr20:14201400-14206200	Weak transcription	Fetal Heart	heart
16	chr20:14201600-14202200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr20:14201600-14204600	Weak transcription	NHEK	skin
18	chr20:14201800-14206600	Weak transcription	Fetal Intestine Small	intestine
19	chr20:14201800-14206800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr20:14201800-14206800	Weak transcription	Fetal Intestine Large	intestine

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