Variant report

Variant	rs73265105
Chromosome Location	chr14:31946694-31946695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31926644..31929603-chr14:31946033..31947573,2	K562	blood:

Variant related genes	Relation type
ENSG00000129480	Chromatin interaction
ENSG00000203546	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs57015885	1.00[AMR][1000 genomes]
rs57032446	1.00[AMR][1000 genomes]
rs57498770	1.00[AMR][1000 genomes]
rs59233829	1.00[AMR][1000 genomes]
rs73259360	1.00[AMR][1000 genomes]
rs73259371	1.00[AMR][1000 genomes]
rs73259385	1.00[AMR][1000 genomes]
rs73259387	1.00[AMR][1000 genomes]
rs73261105	1.00[AMR][1000 genomes]
rs73261114	1.00[AMR][1000 genomes]
rs73263161	1.00[AMR][1000 genomes]
rs73263169	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73263193	1.00[AMR][1000 genomes]
rs73265103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265122	1.00[AMR][1000 genomes]
rs73265131	1.00[AMR][1000 genomes]
rs73265161	1.00[AMR][1000 genomes]
rs73265192	1.00[AMR][1000 genomes]
rs73265196	1.00[AMR][1000 genomes]
rs73267286	1.00[AMR][1000 genomes]
rs73271227	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1042776	chr14:31844026-32003929	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv542019	chr14:31844026-32003929	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	nsv456198	chr14:31919728-31972289	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv564179	chr14:31919728-31972289	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31945000-31947600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:31945800-31946800	Enhancers	Brain Cingulate Gyrus	brain
3	chr14:31946000-31946800	Enhancers	Adipose Nuclei	Adipose
4	chr14:31946000-31948000	Weak transcription	Brain Angular Gyrus	brain
5	chr14:31946200-31947400	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:31946200-31947800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:31946200-31948200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:31946400-31946800	Enhancers	Aorta	Aorta
9	chr14:31946400-31947600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr14:31946600-31948200	Weak transcription	Fetal Heart	heart

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