Variant report

Variant	rs73267203
Chromosome Location	chr6:166813097-166813098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2017204	1.00[AMR][1000 genomes]
rs2017647	1.00[AMR][1000 genomes]
rs3734604	1.00[ASN][1000 genomes]
rs3799674	1.00[ASN][1000 genomes]
rs73265112	1.00[ASN][1000 genomes]
rs73265166	1.00[AMR][1000 genomes]
rs7750474	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv523548	chr6:166796433-166819774	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166797600-166835800	Weak transcription	Right Atrium	heart
2	chr6:166802400-166822400	Weak transcription	Gastric	stomach
3	chr6:166804200-166822200	Weak transcription	Brain Angular Gyrus	brain
4	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
5	chr6:166809200-166814200	Weak transcription	Fetal Heart	heart
6	chr6:166812200-166813200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:166812200-166813200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:166812200-166813200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:166812200-166814400	Enhancers	Liver	Liver
10	chr6:166812200-166822200	Weak transcription	Brain Anterior Caudate	brain
11	chr6:166812800-166813200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:166812800-166813200	Flanking Active TSS	HepG2	liver
13	chr6:166813000-166813200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:166813000-166814000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:166813000-166822400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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