Variant report

Variant	rs73267279
Chromosome Location	chr6:166826615-166826616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:166825939..166829623-chr6:166829937..166832545,3	K562	blood:
2	chr6:166822277..166824260-chr6:166826343..166828176,2	K562	blood:
3	chr6:166821049..166824260-chr6:166825235..166828176,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16898905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16898907	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16898909	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73267276	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73267284	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166797600-166835800	Weak transcription	Right Atrium	heart
2	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
3	chr6:166814400-166837200	Weak transcription	Fetal Heart	heart
4	chr6:166816600-166827000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:166816600-166833000	Weak transcription	HSMM	muscle
6	chr6:166816800-166832400	Weak transcription	NH-A	brain
7	chr6:166817000-166829000	Weak transcription	NHDF-Ad	bronchial
8	chr6:166817200-166833800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:166820600-166829400	Weak transcription	HSMMtube	muscle
10	chr6:166821000-166832200	Weak transcription	Primary B cells from cord blood	blood
11	chr6:166821600-166829200	Weak transcription	Fetal Kidney	kidney
12	chr6:166821800-166829600	Strong transcription	Fetal Muscle Trunk	muscle
13	chr6:166821800-166833800	Weak transcription	Stomach Mucosa	stomach
14	chr6:166821800-166838600	Strong transcription	Muscle Satellite Cultured Cells	--
15	chr6:166822000-166829000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:166822000-166833800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:166822000-166837200	Strong transcription	Fetal Stomach	stomach
18	chr6:166822000-166838200	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:166822200-166827400	Strong transcription	Brain Germinal Matrix	brain
20	chr6:166822200-166830000	Strong transcription	Brain Cingulate Gyrus	brain
21	chr6:166822200-166836000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:166822200-166837200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:166822200-166838600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:166822400-166826800	Weak transcription	HUVEC	blood vessel
25	chr6:166822400-166838400	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:166822400-166838600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:166822400-166838600	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr6:166822600-166829400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:166822800-166827000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:166822800-166829400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:166822800-166829400	Weak transcription	Fetal Brain Male	brain
32	chr6:166822800-166832000	Weak transcription	Aorta	Aorta
33	chr6:166822800-166832800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:166822800-166836200	Weak transcription	Ovary	ovary
35	chr6:166823000-166828600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:166823000-166828800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr6:166823000-166829400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:166823200-166827800	Strong transcription	Lung	lung
39	chr6:166823400-166827000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:166823400-166829400	Weak transcription	Fetal Lung	lung
41	chr6:166823600-166829400	Weak transcription	Fetal Intestine Large	intestine
42	chr6:166823600-166832200	Weak transcription	Liver	Liver
43	chr6:166823600-166838000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:166823800-166827600	Strong transcription	Brain Anterior Caudate	brain
45	chr6:166823800-166829400	Weak transcription	Small Intestine	intestine
46	chr6:166823800-166833400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:166823800-166835000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:166823800-166836600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:166824000-166827400	Strong transcription	Fetal Intestine Small	intestine
50	chr6:166824000-166828200	Strong transcription	Brain Inferior Temporal Lobe	brain

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