Variant report

Variant	rs7326804
Chromosome Location	chr13:30310382-30310383
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1023162	0.81[ASN][1000 genomes]
rs1023163	0.81[ASN][1000 genomes]
rs1093774	0.81[ASN][1000 genomes]
rs2234417	1.00[CHB][hapmap]
rs2388240	0.90[ASN][1000 genomes]
rs2388243	0.97[ASN][1000 genomes]
rs280920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs280921	0.81[ASN][1000 genomes]
rs280948	0.84[ASN][1000 genomes]
rs280957	0.81[ASN][1000 genomes]
rs280958	0.81[ASN][1000 genomes]
rs280960	0.81[ASN][1000 genomes]
rs563819	0.81[ASN][1000 genomes]
rs598281	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs73157112	1.00[ASN][1000 genomes]
rs819102	0.81[ASN][1000 genomes]
rs943564	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30305800-30310600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:30307800-30312800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr13:30308600-30310400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:30310000-30317400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:30310200-30317200	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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