Variant report

Variant	rs73268099
Chromosome Location	chr17:28592445-28592446
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:28529415..28532097-chr17:28590641..28592502,2	K562	blood:
2	chr17:28586614..28588779-chr17:28591632..28593738,2	MCF-7	breast:
3	chr17:28589731..28592506-chr17:28597794..28599930,2	K562	blood:

Variant related genes	Relation type
ENSG00000108578	Chromatin interaction
ENSG00000108576	Chromatin interaction
ENSG00000264125	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1050565	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11656408	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11870192	0.87[AMR][1000 genomes]
rs12938714	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12939390	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12941223	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12945042	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12947654	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12949747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17767256	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2321706	0.82[ASN][1000 genomes]
rs3103303	0.84[ASN][1000 genomes]
rs3103306	0.82[ASN][1000 genomes]
rs3110452	0.84[ASN][1000 genomes]
rs33980254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34353378	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34622227	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35724800	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36000555	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36048853	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3764449	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3794806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7208052	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7214248	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7223821	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7342921	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8078900	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080149	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:28566600-28618000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:28567600-28598000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr17:28570400-28611600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr17:28570800-28596400	Weak transcription	Fetal Brain Male	brain
5	chr17:28571400-28618000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr17:28572200-28607000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr17:28572400-28598000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr17:28572600-28598000	Weak transcription	Small Intestine	intestine
9	chr17:28573800-28595600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr17:28573800-28615400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr17:28574000-28595200	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr17:28574000-28616800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:28574600-28604600	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr17:28576000-28594600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr17:28576200-28599200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr17:28576200-28599400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr17:28576200-28618000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr17:28577000-28593600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr17:28577000-28597800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr17:28577000-28598200	Weak transcription	Colonic Mucosa	Colon
21	chr17:28578400-28594000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr17:28579200-28616200	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr17:28580600-28599200	Weak transcription	NHLF	lung
24	chr17:28580800-28592600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr17:28582800-28595200	Strong transcription	Primary T cells from cord blood	blood
26	chr17:28582800-28595200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr17:28583000-28602800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr17:28583000-28616600	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr17:28583000-28616600	Strong transcription	Fetal Thymus	thymus
30	chr17:28583600-28594400	Strong transcription	Fetal Muscle Leg	muscle
31	chr17:28583600-28595400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr17:28583600-28598200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr17:28583600-28604800	Strong transcription	Fetal Intestine Large	intestine
34	chr17:28583600-28616400	Strong transcription	Dnd41	blood
35	chr17:28583800-28594200	Strong transcription	Stomach Smooth Muscle	stomach
36	chr17:28583800-28594600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr17:28583800-28595400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr17:28583800-28601800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr17:28583800-28604600	Strong transcription	K562	blood
40	chr17:28583800-28605000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr17:28584000-28601600	Strong transcription	GM12878-XiMat	blood
42	chr17:28584200-28598000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr17:28585400-28594800	Strong transcription	HepG2	liver
44	chr17:28585800-28602000	Strong transcription	Placenta	Placenta
45	chr17:28586000-28617400	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr17:28586200-28595200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr17:28586200-28599400	Weak transcription	Right Ventricle	heart
48	chr17:28586200-28600000	Weak transcription	Gastric	stomach
49	chr17:28586400-28595400	Strong transcription	NHDF-Ad	bronchial
50	chr17:28586400-28601800	Strong transcription	HSMM	muscle

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