Variant report

Variant	rs73268993
Chromosome Location	chr5:115773984-115773985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs13360956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17139822	1.00[EUR][1000 genomes]
rs1863988	1.00[EUR][1000 genomes]
rs1963859	1.00[EUR][1000 genomes]
rs57331771	1.00[EUR][1000 genomes]
rs58112531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59453842	1.00[EUR][1000 genomes]
rs59710297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59909017	1.00[EUR][1000 genomes]
rs60032314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60114388	1.00[AMR][1000 genomes]
rs60372854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60456887	1.00[EUR][1000 genomes]
rs73261087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73263076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266825	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266864	1.00[AMR][1000 genomes]
rs73268917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268959	1.00[EUR][1000 genomes]
rs73268964	1.00[EUR][1000 genomes]
rs73268967	1.00[EUR][1000 genomes]
rs73268975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268998	1.00[AFR][1000 genomes]
rs73270707	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73270746	1.00[EUR][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
4	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:115750200-115779400	Weak transcription	Fetal Intestine Small	intestine
6	chr5:115751600-115774800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr5:115752800-115779400	Weak transcription	Fetal Intestine Large	intestine
8	chr5:115757000-115774000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:115757200-115782000	Weak transcription	Gastric	stomach
10	chr5:115757400-115775400	Weak transcription	Adipose Nuclei	Adipose
11	chr5:115759800-115776400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:115760000-115781400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr5:115768000-115774600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:115768400-115774600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:115768400-115777000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:115768400-115777800	Weak transcription	Ovary	ovary
17	chr5:115768400-115781800	Weak transcription	Fetal Lung	lung
18	chr5:115768800-115780600	Weak transcription	Primary B cells from cord blood	blood
19	chr5:115769800-115777800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:115771000-115774400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr5:115771800-115775000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:115772000-115781200	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr5:115772000-115781800	Weak transcription	Spleen	Spleen
24	chr5:115772200-115779000	Enhancers	Brain Angular Gyrus	brain
25	chr5:115772200-115781400	Enhancers	Brain Hippocampus Middle	brain
26	chr5:115772400-115774200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
27	chr5:115772400-115777000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr5:115772400-115781400	Enhancers	Brain Substantia Nigra	brain
29	chr5:115772600-115774400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr5:115772600-115775200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:115772600-115781200	Enhancers	Brain Cingulate Gyrus	brain
32	chr5:115772800-115774000	Weak transcription	Right Ventricle	heart
33	chr5:115772800-115774400	Weak transcription	Psoas Muscle	Psoas
34	chr5:115772800-115776000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr5:115773000-115774600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
36	chr5:115773000-115774600	Enhancers	Duodenum Mucosa	Duodenum
37	chr5:115773000-115774600	Enhancers	Small Intestine	intestine
38	chr5:115773200-115774200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr5:115773200-115774200	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr5:115773200-115775000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
41	chr5:115773200-115775200	Weak transcription	Right Atrium	heart
42	chr5:115773200-115780600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr5:115773200-115781000	Weak transcription	Primary T cells from cord blood	blood
44	chr5:115773200-115781200	Enhancers	Brain Anterior Caudate	brain
45	chr5:115773400-115774000	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr5:115773400-115774800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
47	chr5:115773400-115775200	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr5:115773400-115776200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr5:115773400-115777400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr5:115773600-115781600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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