Variant report

Variant	rs73270329
Chromosome Location	chr10:44274208-44274209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr10:44273985-44274520	T-47D	breast:	n/a	chr10:44274323-44274340 chr10:44274324-44274341
2	ESR1	chr10:44273956-44274482	T-47D	breast:	n/a	chr10:44274323-44274340 chr10:44274324-44274341
3	ESR1	chr10:44273895-44274547	T-47D	breast:	n/a	chr10:44274323-44274340 chr10:44274324-44274341
4	GATA3	chr10:44273891-44274298	T-47D	breast:	n/a	n/a
5	ESR1	chr10:44273982-44274522	T-47D	breast:	n/a	chr10:44274323-44274340 chr10:44274324-44274341
6	FOXA1	chr10:44273967-44274291	T-47D	breast:	n/a	n/a
7	ESR1	chr10:44274000-44274486	T-47D	breast:	n/a	chr10:44274323-44274340 chr10:44274324-44274341
8	GATA3	chr10:44273985-44274417	T-47D	breast:	n/a	n/a
9	FOXA1	chr10:44274015-44274256	T-47D	breast:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF32-2	chr10:44274126-44274317	XLOC_008791
2	lnc-ZNF32-2	chr10:44274155-44274273	XLOC_008791
3	lnc-ZNF32-2	chr10:44274155-44274308	NONHSAT012996

Variant related genes	Relation type
ENSG00000234973	TF binding region

rs_ID	r²[population]
rs11238706	1.00[EUR][1000 genomes]
rs12240973	1.00[EUR][1000 genomes]
rs12249062	1.00[EUR][1000 genomes]
rs12264620	1.00[EUR][1000 genomes]
rs12268749	1.00[EUR][1000 genomes]
rs57113623	0.87[EUR][1000 genomes]
rs59583709	1.00[AFR][1000 genomes]
rs60454219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60924513	0.87[EUR][1000 genomes]
rs61432090	1.00[EUR][1000 genomes]
rs61581987	1.00[EUR][1000 genomes]
rs73265875	1.00[EUR][1000 genomes]
rs73268476	1.00[AFR][1000 genomes]
rs73268482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73270326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73270364	1.00[EUR][1000 genomes]
rs73276542	0.87[EUR][1000 genomes]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44271200-44277000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44271200-44277400	Weak transcription	Spleen	Spleen
3	chr10:44272000-44280800	Weak transcription	Right Atrium	heart
4	chr10:44272800-44277000	Weak transcription	Pancreas	Pancrea
5	chr10:44273000-44275600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:44273600-44274400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:44273600-44274400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr10:44273600-44274800	Enhancers	Primary T cells from cord blood	blood
9	chr10:44273800-44274600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:44273800-44277000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:44274000-44274400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr10:44274000-44274400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr10:44274000-44274400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr10:44274000-44274600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:44274000-44274600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:44274000-44274600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:44274000-44274600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:44274200-44274400	Enhancers	Primary hematopoietic stem cells	blood
19	chr10:44274200-44274400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr10:44274200-44274600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:44274200-44274600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr10:44274200-44274600	Enhancers	Fetal Thymus	thymus
23	chr10:44274200-44274600	Enhancers	Left Ventricle	heart
24	chr10:44274200-44274600	Enhancers	Psoas Muscle	Psoas
25	chr10:44274200-44274800	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr10:44274200-44274800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr10:44274200-44274800	Enhancers	Lung	lung
28	chr10:44274200-44275000	Enhancers	Primary T cells fromperipheralblood	blood
29	chr10:44274200-44275600	Enhancers	Stomach Mucosa	stomach

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