Variant report

Variant	rs73275020
Chromosome Location	chr14:69917388-69917389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:69917376-69917482	ProgFib	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69891176..69893252-chr14:69916771..69918608,2	MCF-7	breast:

Variant related genes	Relation type
SLC39A9	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1275721	1.00[AMR][1000 genomes]
rs1378288	0.83[AMR][1000 genomes]
rs59840366	0.83[AMR][1000 genomes]
rs73275004	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275024	0.80[AFR][1000 genomes]
rs73293362	0.83[AMR][1000 genomes]
rs73293367	0.83[AMR][1000 genomes]
rs73293372	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8011911	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3396933	chr14:69906914-70001258	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69868000-69923200	Weak transcription	Esophagus	oesophagus
2	chr14:69889200-69922400	Weak transcription	Brain Substantia Nigra	brain
3	chr14:69889200-69923400	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:69889400-69923200	Weak transcription	Pancreas	Pancrea
5	chr14:69890000-69922400	Weak transcription	Fetal Brain Male	brain
6	chr14:69890800-69922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:69891200-69922800	Weak transcription	Colonic Mucosa	Colon
8	chr14:69891200-69923000	Weak transcription	NHLF	lung
9	chr14:69892000-69920600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:69892200-69931400	Weak transcription	K562	blood
11	chr14:69893000-69919800	Weak transcription	Spleen	Spleen
12	chr14:69893000-69922800	Weak transcription	Aorta	Aorta
13	chr14:69893200-69926800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:69893400-69922200	Weak transcription	Left Ventricle	heart
15	chr14:69893400-69922400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr14:69893400-69922600	Weak transcription	Brain Germinal Matrix	brain
17	chr14:69893400-69922800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:69893400-69923000	Weak transcription	Lung	lung
19	chr14:69893600-69920200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr14:69893600-69920400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr14:69893600-69922000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr14:69893600-69922400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr14:69893600-69922400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr14:69893600-69922800	Weak transcription	Brain Hippocampus Middle	brain
25	chr14:69893600-69923200	Weak transcription	Gastric	stomach
26	chr14:69893600-69925000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr14:69894000-69922200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr14:69894000-69922800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr14:69894000-69924400	Weak transcription	Brain Angular Gyrus	brain
30	chr14:69894400-69919800	Weak transcription	Ovary	ovary
31	chr14:69894600-69919200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr14:69894600-69920600	Weak transcription	Adipose Nuclei	Adipose
33	chr14:69894600-69921800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr14:69894600-69922200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr14:69894600-69922800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr14:69895600-69919800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr14:69895600-69921400	Weak transcription	NH-A	brain
38	chr14:69896800-69922400	Weak transcription	Brain Anterior Caudate	brain
39	chr14:69897000-69922000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr14:69902400-69927000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr14:69903600-69922200	Weak transcription	Small Intestine	intestine
42	chr14:69903600-69937800	Weak transcription	Psoas Muscle	Psoas
43	chr14:69906600-69921400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr14:69906800-69921200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:69906800-69921400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr14:69906800-69922400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr14:69906800-69924400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr14:69906800-69924400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr14:69908200-69920400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr14:69908400-69922400	Weak transcription	Fetal Brain Female	brain

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